Strain Fitness in Bacteroides thetaiotaomicron VPI-5482 around BT1722

Experiment: Amylopectin from Potato; autoclaved 2.5 mg/ml (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBT1720 and BT1721 are separated by 20 nucleotidesBT1721 and BT1722 are separated by 63 nucleotidesBT1722 and BT1723 are separated by 10 nucleotides BT1720: BT1720 - phosphoenolpyruvate phosphomutase precursor (NCBI ptt file), at 2,117,581 to 2,118,882 BT1720 BT1721: BT1721 - putative glucose-1-P-cytidylyltransferase (NCBI ptt file), at 2,118,903 to 2,119,622 BT1721 BT1722: BT1722 - putative protein involved in capsular polysaccharide biosynthesis (NCBI ptt file), at 2,119,686 to 2,120,834 BT1722 BT1723: BT1723 - polysialic acid transport protein kpsD precursor (NCBI ptt file), at 2,120,845 to 2,123,214 BT1723 Position (kb) 2119 2120 2121Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 2118.696 kb on + strand, within BT1720at 2118.709 kb on + strand, within BT1720at 2118.751 kb on - strand, within BT1720at 2118.768 kb on + strandat 2118.769 kb on - strandat 2118.804 kb on + strandat 2118.865 kb on - strandat 2118.877 kb on - strandat 2118.896 kb on - strandat 2118.904 kb on + strandat 2118.948 kb on + strandat 2118.981 kb on + strand, within BT1721at 2118.981 kb on + strand, within BT1721at 2119.017 kb on + strand, within BT1721at 2119.026 kb on + strand, within BT1721at 2119.033 kb on + strand, within BT1721at 2119.067 kb on + strand, within BT1721at 2119.067 kb on + strand, within BT1721at 2119.115 kb on + strand, within BT1721at 2119.151 kb on + strand, within BT1721at 2119.278 kb on + strand, within BT1721at 2119.354 kb on + strand, within BT1721at 2119.354 kb on + strand, within BT1721at 2119.356 kb on + strand, within BT1721at 2119.363 kb on + strand, within BT1721at 2119.412 kb on + strand, within BT1721at 2119.438 kb on + strand, within BT1721at 2119.451 kb on + strand, within BT1721at 2119.451 kb on + strand, within BT1721at 2119.452 kb on - strand, within BT1721at 2119.515 kb on + strand, within BT1721at 2119.526 kb on + strand, within BT1721at 2119.526 kb on + strand, within BT1721at 2119.526 kb on + strand, within BT1721at 2119.639 kb on + strandat 2119.640 kb on - strandat 2119.658 kb on + strandat 2119.658 kb on + strandat 2119.701 kb on + strandat 2119.861 kb on - strand, within BT1722at 2119.930 kb on + strand, within BT1722at 2119.940 kb on - strand, within BT1722at 2120.016 kb on + strand, within BT1722at 2120.086 kb on + strand, within BT1722at 2120.139 kb on + strand, within BT1722at 2120.327 kb on + strand, within BT1722at 2120.348 kb on + strand, within BT1722at 2120.358 kb on + strand, within BT1722at 2120.358 kb on + strand, within BT1722at 2120.361 kb on + strand, within BT1722at 2120.381 kb on + strand, within BT1722at 2120.439 kb on - strand, within BT1722at 2120.648 kb on + strand, within BT1722at 2120.679 kb on + strand, within BT1722at 2120.681 kb on + strand, within BT1722at 2120.688 kb on + strand, within BT1722at 2120.692 kb on - strand, within BT1722at 2120.735 kb on + strandat 2120.736 kb on - strandat 2120.742 kb on - strandat 2120.816 kb on - strandat 2120.837 kb on + strandat 2121.157 kb on + strand, within BT1723at 2121.157 kb on + strand, within BT1723at 2121.157 kb on + strand, within BT1723at 2121.162 kb on + strand, within BT1723at 2121.508 kb on + strand, within BT1723at 2121.592 kb on + strand, within BT1723at 2121.624 kb on - strand, within BT1723at 2121.684 kb on + strand, within BT1723

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Per-strain Table

Position Strand Gene LocusTag Fraction Amylopectin from Potato; autoclaved 2.5 mg/ml (C)
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2,118,696 + BT1720 0.86 +0.4
2,118,709 + BT1720 0.87 -1.6
2,118,751 - BT1720 0.90 -1.0
2,118,768 + -0.6
2,118,769 - -0.8
2,118,804 + -1.4
2,118,865 - -0.2
2,118,877 - -1.2
2,118,896 - -0.6
2,118,904 + +1.0
2,118,948 + -2.5
2,118,981 + BT1721 0.11 -0.2
2,118,981 + BT1721 0.11 -1.9
2,119,017 + BT1721 0.16 -0.0
2,119,026 + BT1721 0.17 -1.2
2,119,033 + BT1721 0.18 -0.2
2,119,067 + BT1721 0.23 +0.4
2,119,067 + BT1721 0.23 -0.6
2,119,115 + BT1721 0.29 +0.4
2,119,151 + BT1721 0.34 -0.1
2,119,278 + BT1721 0.52 -1.0
2,119,354 + BT1721 0.63 -0.2
2,119,354 + BT1721 0.63 -1.4
2,119,356 + BT1721 0.63 -0.5
2,119,363 + BT1721 0.64 -0.6
2,119,412 + BT1721 0.71 -0.5
2,119,438 + BT1721 0.74 -1.6
2,119,451 + BT1721 0.76 -0.7
2,119,451 + BT1721 0.76 -1.2
2,119,452 - BT1721 0.76 +0.4
2,119,515 + BT1721 0.85 -0.6
2,119,526 + BT1721 0.87 -1.6
2,119,526 + BT1721 0.87 -1.1
2,119,526 + BT1721 0.87 -1.4
2,119,639 + -1.6
2,119,640 - +0.4
2,119,658 + +1.4
2,119,658 + -1.2
2,119,701 + +1.4
2,119,861 - BT1722 0.15 -0.6
2,119,930 + BT1722 0.21 -2.6
2,119,940 - BT1722 0.22 -2.2
2,120,016 + BT1722 0.29 -4.2
2,120,086 + BT1722 0.35 -0.6
2,120,139 + BT1722 0.39 -2.4
2,120,327 + BT1722 0.56 -1.8
2,120,348 + BT1722 0.58 -1.2
2,120,358 + BT1722 0.58 -0.2
2,120,358 + BT1722 0.58 -1.2
2,120,361 + BT1722 0.59 +0.4
2,120,381 + BT1722 0.60 -1.2
2,120,439 - BT1722 0.66 -0.6
2,120,648 + BT1722 0.84 -2.4
2,120,679 + BT1722 0.86 -1.2
2,120,681 + BT1722 0.87 +0.4
2,120,688 + BT1722 0.87 +0.4
2,120,692 - BT1722 0.88 -0.6
2,120,735 + -1.8
2,120,736 - +0.4
2,120,742 - -0.2
2,120,816 - -0.2
2,120,837 + -0.6
2,121,157 + BT1723 0.13 +0.4
2,121,157 + BT1723 0.13 -0.6
2,121,157 + BT1723 0.13 -1.1
2,121,162 + BT1723 0.13 -1.2
2,121,508 + BT1723 0.28 -1.2
2,121,592 + BT1723 0.32 -1.2
2,121,624 - BT1723 0.33 -0.6
2,121,684 + BT1723 0.35 -1.2

Or see this region's nucleotide sequence