Experiment: Amylopectin from Potato; autoclaved 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BT1720 and BT1721 are separated by 20 nucleotides BT1721 and BT1722 are separated by 63 nucleotides BT1722 and BT1723 are separated by 10 nucleotides
BT1720: BT1720 - phosphoenolpyruvate phosphomutase precursor (NCBI ptt file), at 2,117,581 to 2,118,882
BT1720
BT1721: BT1721 - putative glucose-1-P-cytidylyltransferase (NCBI ptt file), at 2,118,903 to 2,119,622
BT1721
BT1722: BT1722 - putative protein involved in capsular polysaccharide biosynthesis (NCBI ptt file), at 2,119,686 to 2,120,834
BT1722
BT1723: BT1723 - polysialic acid transport protein kpsD precursor (NCBI ptt file), at 2,120,845 to 2,123,214
BT1723
Position (kb)
2119
2120
2121 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1 at 2118.696 kb on + strand, within BT1720 at 2118.709 kb on + strand, within BT1720 at 2118.751 kb on - strand, within BT1720 at 2118.768 kb on + strand at 2118.769 kb on - strand at 2118.804 kb on + strand at 2118.865 kb on - strand at 2118.877 kb on - strand at 2118.896 kb on - strand at 2118.904 kb on + strand at 2118.948 kb on + strand at 2118.981 kb on + strand, within BT1721 at 2118.981 kb on + strand, within BT1721 at 2119.017 kb on + strand, within BT1721 at 2119.026 kb on + strand, within BT1721 at 2119.033 kb on + strand, within BT1721 at 2119.067 kb on + strand, within BT1721 at 2119.067 kb on + strand, within BT1721 at 2119.115 kb on + strand, within BT1721 at 2119.151 kb on + strand, within BT1721 at 2119.278 kb on + strand, within BT1721 at 2119.354 kb on + strand, within BT1721 at 2119.354 kb on + strand, within BT1721 at 2119.356 kb on + strand, within BT1721 at 2119.363 kb on + strand, within BT1721 at 2119.412 kb on + strand, within BT1721 at 2119.438 kb on + strand, within BT1721 at 2119.451 kb on + strand, within BT1721 at 2119.451 kb on + strand, within BT1721 at 2119.452 kb on - strand, within BT1721 at 2119.515 kb on + strand, within BT1721 at 2119.526 kb on + strand, within BT1721 at 2119.526 kb on + strand, within BT1721 at 2119.526 kb on + strand, within BT1721 at 2119.639 kb on + strand at 2119.640 kb on - strand at 2119.658 kb on + strand at 2119.658 kb on + strand at 2119.701 kb on + strand at 2119.861 kb on - strand, within BT1722 at 2119.930 kb on + strand, within BT1722 at 2119.940 kb on - strand, within BT1722 at 2120.016 kb on + strand, within BT1722 at 2120.086 kb on + strand, within BT1722 at 2120.139 kb on + strand, within BT1722 at 2120.327 kb on + strand, within BT1722 at 2120.348 kb on + strand, within BT1722 at 2120.358 kb on + strand, within BT1722 at 2120.358 kb on + strand, within BT1722 at 2120.361 kb on + strand, within BT1722 at 2120.381 kb on + strand, within BT1722 at 2120.439 kb on - strand, within BT1722 at 2120.648 kb on + strand, within BT1722 at 2120.679 kb on + strand, within BT1722 at 2120.681 kb on + strand, within BT1722 at 2120.688 kb on + strand, within BT1722 at 2120.692 kb on - strand, within BT1722 at 2120.735 kb on + strand at 2120.736 kb on - strand at 2120.742 kb on - strand at 2120.816 kb on - strand at 2120.837 kb on + strand at 2121.157 kb on + strand, within BT1723 at 2121.157 kb on + strand, within BT1723 at 2121.157 kb on + strand, within BT1723 at 2121.162 kb on + strand, within BT1723 at 2121.508 kb on + strand, within BT1723 at 2121.592 kb on + strand, within BT1723 at 2121.624 kb on - strand, within BT1723 at 2121.684 kb on + strand, within BT1723
Per-strain Table
Position Strand Gene LocusTag Fraction Amylopectin from Potato; autoclaved 2.5 mg/ml (C) remove 2,118,696 + BT1720 0.86 +0.4 2,118,709 + BT1720 0.87 -1.6 2,118,751 - BT1720 0.90 -1.0 2,118,768 + -0.6 2,118,769 - -0.8 2,118,804 + -1.4 2,118,865 - -0.2 2,118,877 - -1.2 2,118,896 - -0.6 2,118,904 + +1.0 2,118,948 + -2.5 2,118,981 + BT1721 0.11 -0.2 2,118,981 + BT1721 0.11 -1.9 2,119,017 + BT1721 0.16 -0.0 2,119,026 + BT1721 0.17 -1.2 2,119,033 + BT1721 0.18 -0.2 2,119,067 + BT1721 0.23 +0.4 2,119,067 + BT1721 0.23 -0.6 2,119,115 + BT1721 0.29 +0.4 2,119,151 + BT1721 0.34 -0.1 2,119,278 + BT1721 0.52 -1.0 2,119,354 + BT1721 0.63 -0.2 2,119,354 + BT1721 0.63 -1.4 2,119,356 + BT1721 0.63 -0.5 2,119,363 + BT1721 0.64 -0.6 2,119,412 + BT1721 0.71 -0.5 2,119,438 + BT1721 0.74 -1.6 2,119,451 + BT1721 0.76 -0.7 2,119,451 + BT1721 0.76 -1.2 2,119,452 - BT1721 0.76 +0.4 2,119,515 + BT1721 0.85 -0.6 2,119,526 + BT1721 0.87 -1.6 2,119,526 + BT1721 0.87 -1.1 2,119,526 + BT1721 0.87 -1.4 2,119,639 + -1.6 2,119,640 - +0.4 2,119,658 + +1.4 2,119,658 + -1.2 2,119,701 + +1.4 2,119,861 - BT1722 0.15 -0.6 2,119,930 + BT1722 0.21 -2.6 2,119,940 - BT1722 0.22 -2.2 2,120,016 + BT1722 0.29 -4.2 2,120,086 + BT1722 0.35 -0.6 2,120,139 + BT1722 0.39 -2.4 2,120,327 + BT1722 0.56 -1.8 2,120,348 + BT1722 0.58 -1.2 2,120,358 + BT1722 0.58 -0.2 2,120,358 + BT1722 0.58 -1.2 2,120,361 + BT1722 0.59 +0.4 2,120,381 + BT1722 0.60 -1.2 2,120,439 - BT1722 0.66 -0.6 2,120,648 + BT1722 0.84 -2.4 2,120,679 + BT1722 0.86 -1.2 2,120,681 + BT1722 0.87 +0.4 2,120,688 + BT1722 0.87 +0.4 2,120,692 - BT1722 0.88 -0.6 2,120,735 + -1.8 2,120,736 - +0.4 2,120,742 - -0.2 2,120,816 - -0.2 2,120,837 + -0.6 2,121,157 + BT1723 0.13 +0.4 2,121,157 + BT1723 0.13 -0.6 2,121,157 + BT1723 0.13 -1.1 2,121,162 + BT1723 0.13 -1.2 2,121,508 + BT1723 0.28 -1.2 2,121,592 + BT1723 0.32 -1.2 2,121,624 - BT1723 0.33 -0.6 2,121,684 + BT1723 0.35 -1.2
Or see this region's nucleotide sequence