Experiment: Amylopectin from Potato; autoclaved 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BT1662 and BT1663 are separated by 36 nucleotides BT1663 and ruvC are separated by 85 nucleotides ruvC and BT1665 overlap by 4 nucleotides
BT1662: BT1662 - putative molybdenum transport ATP-binding protein (NCBI ptt file), at 2,054,158 to 2,055,612
BT1662
BT1663: BT1663 - pullulanase precursor (NCBI ptt file), at 2,055,649 to 2,057,655
BT1663
BT_1664: ruvC - Holliday junction resolvase (RefSeq), at 2,057,741 to 2,058,307
ruvC
BT1665: BT1665 - hypothetical protein (NCBI ptt file), at 2,058,304 to 2,058,606
BT1665
Position (kb)
2055
2056
2057
2058 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2054.655 kb on - strand, within BT1662 at 2054.655 kb on - strand, within BT1662 at 2054.832 kb on - strand, within BT1662 at 2054.836 kb on - strand, within BT1662 at 2054.972 kb on - strand, within BT1662 at 2054.972 kb on - strand, within BT1662 at 2055.162 kb on + strand, within BT1662 at 2055.258 kb on + strand, within BT1662 at 2055.330 kb on - strand, within BT1662 at 2055.332 kb on + strand, within BT1662 at 2055.332 kb on + strand, within BT1662 at 2055.374 kb on + strand, within BT1662 at 2055.375 kb on - strand, within BT1662 at 2055.389 kb on + strand, within BT1662 at 2055.454 kb on - strand, within BT1662 at 2055.612 kb on + strand at 2055.613 kb on - strand at 2055.613 kb on - strand at 2055.650 kb on + strand at 2055.655 kb on - strand at 2055.712 kb on + strand at 2055.727 kb on + strand at 2055.745 kb on + strand at 2055.746 kb on - strand at 2055.753 kb on + strand at 2055.760 kb on - strand at 2055.772 kb on - strand at 2055.775 kb on - strand at 2055.817 kb on - strand at 2055.969 kb on + strand, within BT1663 at 2055.970 kb on - strand, within BT1663 at 2056.042 kb on - strand, within BT1663 at 2056.042 kb on - strand, within BT1663 at 2056.044 kb on - strand, within BT1663 at 2056.065 kb on + strand, within BT1663 at 2056.065 kb on + strand, within BT1663 at 2056.150 kb on + strand, within BT1663 at 2056.151 kb on - strand, within BT1663 at 2056.390 kb on + strand, within BT1663 at 2056.390 kb on + strand, within BT1663 at 2056.391 kb on - strand, within BT1663 at 2056.453 kb on + strand, within BT1663 at 2056.453 kb on + strand, within BT1663 at 2056.534 kb on - strand, within BT1663 at 2056.549 kb on + strand, within BT1663 at 2056.549 kb on + strand, within BT1663 at 2056.561 kb on + strand, within BT1663 at 2056.579 kb on + strand, within BT1663 at 2056.580 kb on - strand, within BT1663 at 2056.633 kb on + strand, within BT1663 at 2056.655 kb on - strand, within BT1663 at 2056.659 kb on + strand, within BT1663 at 2056.665 kb on + strand, within BT1663 at 2056.674 kb on + strand, within BT1663 at 2056.675 kb on - strand, within BT1663 at 2056.675 kb on - strand, within BT1663 at 2056.675 kb on - strand, within BT1663 at 2056.728 kb on + strand, within BT1663 at 2056.788 kb on + strand, within BT1663 at 2056.798 kb on - strand, within BT1663 at 2056.805 kb on + strand, within BT1663 at 2056.805 kb on + strand, within BT1663 at 2056.806 kb on - strand, within BT1663 at 2056.806 kb on - strand, within BT1663 at 2056.907 kb on + strand, within BT1663 at 2056.907 kb on + strand, within BT1663 at 2056.927 kb on - strand, within BT1663 at 2056.928 kb on + strand, within BT1663 at 2056.929 kb on - strand, within BT1663 at 2057.169 kb on - strand, within BT1663 at 2057.172 kb on + strand, within BT1663 at 2057.173 kb on - strand, within BT1663 at 2057.173 kb on - strand, within BT1663 at 2057.250 kb on + strand, within BT1663 at 2057.367 kb on + strand, within BT1663 at 2057.367 kb on + strand, within BT1663 at 2057.368 kb on - strand, within BT1663 at 2057.424 kb on - strand, within BT1663 at 2057.464 kb on + strand at 2057.514 kb on + strand at 2057.515 kb on - strand at 2057.517 kb on - strand at 2057.555 kb on - strand at 2057.555 kb on - strand at 2057.561 kb on + strand at 2057.561 kb on + strand at 2057.568 kb on + strand at 2057.571 kb on - strand at 2057.571 kb on - strand at 2057.571 kb on - strand at 2057.589 kb on + strand at 2057.624 kb on - strand at 2057.636 kb on + strand at 2057.656 kb on - strand at 2057.696 kb on - strand at 2057.696 kb on - strand at 2057.707 kb on - strand at 2058.129 kb on - strand, within ruvC at 2058.527 kb on - strand, within BT1665 at 2058.595 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Amylopectin from Potato; autoclaved 2.5 mg/ml (C) remove 2,054,655 - BT1662 0.34 -0.9 2,054,655 - BT1662 0.34 +0.1 2,054,832 - BT1662 0.46 +2.0 2,054,836 - BT1662 0.47 +0.4 2,054,972 - BT1662 0.56 -1.3 2,054,972 - BT1662 0.56 +0.4 2,055,162 + BT1662 0.69 -1.9 2,055,258 + BT1662 0.76 -2.4 2,055,330 - BT1662 0.81 -0.2 2,055,332 + BT1662 0.81 -0.6 2,055,332 + BT1662 0.81 -0.6 2,055,374 + BT1662 0.84 -1.9 2,055,375 - BT1662 0.84 -0.6 2,055,389 + BT1662 0.85 -0.3 2,055,454 - BT1662 0.89 +1.4 2,055,612 + -1.2 2,055,613 - +0.4 2,055,613 - +1.1 2,055,650 + -0.4 2,055,655 - -0.0 2,055,712 + -1.2 2,055,727 + -1.3 2,055,745 + +1.1 2,055,746 - +0.4 2,055,753 + +0.4 2,055,760 - -1.2 2,055,772 - -0.2 2,055,775 - -1.6 2,055,817 - -1.6 2,055,969 + BT1663 0.16 +1.0 2,055,970 - BT1663 0.16 +0.1 2,056,042 - BT1663 0.20 -1.2 2,056,042 - BT1663 0.20 -1.2 2,056,044 - BT1663 0.20 +0.1 2,056,065 + BT1663 0.21 -1.9 2,056,065 + BT1663 0.21 -0.2 2,056,150 + BT1663 0.25 -1.2 2,056,151 - BT1663 0.25 -0.9 2,056,390 + BT1663 0.37 -0.2 2,056,390 + BT1663 0.37 -0.6 2,056,391 - BT1663 0.37 +0.4 2,056,453 + BT1663 0.40 -2.4 2,056,453 + BT1663 0.40 +0.4 2,056,534 - BT1663 0.44 +0.4 2,056,549 + BT1663 0.45 -1.6 2,056,549 + BT1663 0.45 -0.8 2,056,561 + BT1663 0.45 +0.0 2,056,579 + BT1663 0.46 +0.4 2,056,580 - BT1663 0.46 -2.6 2,056,633 + BT1663 0.49 -1.6 2,056,655 - BT1663 0.50 -0.6 2,056,659 + BT1663 0.50 -1.3 2,056,665 + BT1663 0.51 -1.2 2,056,674 + BT1663 0.51 -2.3 2,056,675 - BT1663 0.51 +0.4 2,056,675 - BT1663 0.51 -0.6 2,056,675 - BT1663 0.51 -1.2 2,056,728 + BT1663 0.54 -1.1 2,056,788 + BT1663 0.57 +0.4 2,056,798 - BT1663 0.57 -1.2 2,056,805 + BT1663 0.58 -1.2 2,056,805 + BT1663 0.58 -0.6 2,056,806 - BT1663 0.58 -1.2 2,056,806 - BT1663 0.58 -2.0 2,056,907 + BT1663 0.63 -0.9 2,056,907 + BT1663 0.63 -1.2 2,056,927 - BT1663 0.64 +1.4 2,056,928 + BT1663 0.64 -0.4 2,056,929 - BT1663 0.64 +0.8 2,057,169 - BT1663 0.76 -0.2 2,057,172 + BT1663 0.76 -0.1 2,057,173 - BT1663 0.76 -0.3 2,057,173 - BT1663 0.76 -0.6 2,057,250 + BT1663 0.80 +0.2 2,057,367 + BT1663 0.86 +0.4 2,057,367 + BT1663 0.86 -1.0 2,057,368 - BT1663 0.86 +2.4 2,057,424 - BT1663 0.88 +0.9 2,057,464 + -0.6 2,057,514 + -0.6 2,057,515 - -1.1 2,057,517 - -0.6 2,057,555 - +0.4 2,057,555 - +0.4 2,057,561 + +0.4 2,057,561 + +0.4 2,057,568 + -1.8 2,057,571 - -0.8 2,057,571 - -0.5 2,057,571 - +0.4 2,057,589 + -1.9 2,057,624 - -0.2 2,057,636 + -0.5 2,057,656 - -0.9 2,057,696 - -0.2 2,057,696 - -1.0 2,057,707 - -1.2 2,058,129 - ruvC BT_1664 0.68 -2.7 2,058,527 - BT1665 0.74 -1.6 2,058,595 - +0.4
Or see this region's nucleotide sequence