Strain Fitness in Bacteroides thetaiotaomicron VPI-5482 around BT1313

Experiment: Amylopectin from Potato; autoclaved 2.5 mg/ml (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBT1312 and BT1313 are separated by 219 nucleotidesBT1313 and BT1314 are separated by 18 nucleotides BT1312: BT1312 - serine protease precursor (NCBI ptt file), at 1,635,993 to 1,637,528 BT1312 BT1313: BT1313 - muconate cycloisomerase (NCBI ptt file), at 1,637,748 to 1,638,899 BT1313 BT1314: BT1314 - dipeptidyl-peptidase VI (NCBI ptt file), at 1,638,918 to 1,639,904 BT1314 Position (kb) 1637 1638 1639Strain fitness (log2 ratio) -3 -2 -1 0 1at 1636.781 kb on + strand, within BT1312at 1637.130 kb on + strand, within BT1312at 1637.296 kb on - strand, within BT1312at 1637.353 kb on - strand, within BT1312at 1637.721 kb on + strandat 1637.922 kb on - strand, within BT1313at 1638.046 kb on - strand, within BT1313at 1638.314 kb on + strand, within BT1313at 1638.365 kb on + strand, within BT1313at 1638.425 kb on + strand, within BT1313at 1638.620 kb on - strand, within BT1313at 1638.630 kb on - strand, within BT1313at 1638.661 kb on + strand, within BT1313at 1638.693 kb on - strand, within BT1313at 1638.735 kb on + strand, within BT1313at 1638.781 kb on + strand, within BT1313at 1638.971 kb on + strandat 1638.976 kb on - strandat 1638.979 kb on + strandat 1639.066 kb on - strand, within BT1314at 1639.105 kb on + strand, within BT1314at 1639.133 kb on + strand, within BT1314at 1639.203 kb on + strand, within BT1314at 1639.221 kb on + strand, within BT1314at 1639.225 kb on + strand, within BT1314at 1639.260 kb on - strand, within BT1314at 1639.334 kb on - strand, within BT1314at 1639.424 kb on + strand, within BT1314at 1639.438 kb on + strand, within BT1314at 1639.571 kb on - strand, within BT1314at 1639.637 kb on + strand, within BT1314at 1639.711 kb on - strand, within BT1314at 1639.757 kb on + strand, within BT1314at 1639.798 kb on - strand, within BT1314at 1639.864 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Amylopectin from Potato; autoclaved 2.5 mg/ml (C)
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1,636,781 + BT1312 0.51 +0.1
1,637,130 + BT1312 0.74 -2.8
1,637,296 - BT1312 0.85 -0.6
1,637,353 - BT1312 0.89 -2.8
1,637,721 + -1.7
1,637,922 - BT1313 0.15 -2.7
1,638,046 - BT1313 0.26 -1.7
1,638,314 + BT1313 0.49 -1.2
1,638,365 + BT1313 0.54 +0.3
1,638,425 + BT1313 0.59 -2.5
1,638,620 - BT1313 0.76 -1.2
1,638,630 - BT1313 0.77 +0.3
1,638,661 + BT1313 0.79 -0.7
1,638,693 - BT1313 0.82 +0.3
1,638,735 + BT1313 0.86 -2.5
1,638,781 + BT1313 0.90 +0.3
1,638,971 + -0.7
1,638,976 - -1.7
1,638,979 + -0.2
1,639,066 - BT1314 0.15 -0.1
1,639,105 + BT1314 0.19 +0.9
1,639,133 + BT1314 0.22 +0.3
1,639,203 + BT1314 0.29 -1.3
1,639,221 + BT1314 0.31 +0.9
1,639,225 + BT1314 0.31 -0.2
1,639,260 - BT1314 0.35 +0.3
1,639,334 - BT1314 0.42 -0.2
1,639,424 + BT1314 0.51 -1.7
1,639,438 + BT1314 0.53 +1.7
1,639,571 - BT1314 0.66 +0.3
1,639,637 + BT1314 0.73 -0.4
1,639,711 - BT1314 0.80 -0.9
1,639,757 + BT1314 0.85 -1.8
1,639,798 - BT1314 0.89 -0.7
1,639,864 - +0.3

Or see this region's nucleotide sequence