Strain Fitness in Bacteroides thetaiotaomicron VPI-5482 around BT1100

Experiment: Amylopectin from Potato; autoclaved 2.5 mg/ml (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBT1098 and BT1099 are separated by 54 nucleotidesBT1099 and BT1100 are separated by 16 nucleotidesBT1100 and BT1101 are separated by 21 nucleotides BT1098: BT1098 - methylglyoxal synthase (NCBI ptt file), at 1,385,256 to 1,385,792 BT1098 BT1099: BT1099 - putative arginase (NCBI ptt file), at 1,385,847 to 1,386,656 BT1099 BT1100: BT1100 - alpha-glucan phosphorylase (NCBI ptt file), at 1,386,673 to 1,389,231 BT1100 BT1101: BT1101 - putative sodium/proton antiporter (NCBI ptt file), at 1,389,253 to 1,391,499 BT1101 Position (kb) 1386 1387 1388 1389 1390Strain fitness (log2 ratio) -2 -1 0 1 2 3at 1385.697 kb on + strand, within BT1098at 1385.730 kb on + strand, within BT1098at 1385.730 kb on + strand, within BT1098at 1385.731 kb on - strand, within BT1098at 1385.825 kb on + strandat 1385.827 kb on + strandat 1385.979 kb on + strand, within BT1099at 1385.979 kb on + strand, within BT1099at 1386.116 kb on + strand, within BT1099at 1386.117 kb on - strand, within BT1099at 1386.234 kb on + strand, within BT1099at 1386.235 kb on - strand, within BT1099at 1386.244 kb on - strand, within BT1099at 1386.273 kb on + strand, within BT1099at 1386.274 kb on - strand, within BT1099at 1386.276 kb on - strand, within BT1099at 1386.400 kb on + strand, within BT1099at 1386.406 kb on + strand, within BT1099at 1386.407 kb on - strand, within BT1099at 1386.503 kb on + strand, within BT1099at 1386.504 kb on - strand, within BT1099at 1386.508 kb on + strand, within BT1099at 1386.534 kb on - strand, within BT1099at 1386.563 kb on - strand, within BT1099at 1386.641 kb on + strandat 1386.665 kb on - strandat 1386.732 kb on - strandat 1386.735 kb on + strandat 1386.736 kb on - strandat 1386.792 kb on + strandat 1386.839 kb on + strandat 1386.840 kb on - strandat 1386.841 kb on + strandat 1386.842 kb on - strandat 1386.870 kb on + strandat 1386.935 kb on + strand, within BT1100at 1386.982 kb on + strand, within BT1100at 1386.997 kb on + strand, within BT1100at 1387.103 kb on + strand, within BT1100at 1387.103 kb on + strand, within BT1100at 1387.144 kb on - strand, within BT1100at 1387.226 kb on + strand, within BT1100at 1387.257 kb on - strand, within BT1100at 1387.383 kb on + strand, within BT1100at 1387.461 kb on + strand, within BT1100at 1387.477 kb on - strand, within BT1100at 1387.502 kb on + strand, within BT1100at 1387.502 kb on + strand, within BT1100at 1387.524 kb on + strand, within BT1100at 1387.529 kb on - strand, within BT1100at 1387.695 kb on + strand, within BT1100at 1387.695 kb on + strand, within BT1100at 1387.696 kb on - strand, within BT1100at 1387.696 kb on - strand, within BT1100at 1387.697 kb on + strand, within BT1100at 1387.697 kb on + strand, within BT1100at 1387.724 kb on - strand, within BT1100at 1387.727 kb on - strand, within BT1100at 1387.984 kb on - strand, within BT1100at 1387.994 kb on - strand, within BT1100at 1388.200 kb on + strand, within BT1100at 1388.200 kb on + strand, within BT1100at 1388.201 kb on - strand, within BT1100at 1388.287 kb on + strand, within BT1100at 1388.292 kb on + strand, within BT1100at 1388.312 kb on - strand, within BT1100at 1388.373 kb on + strand, within BT1100at 1388.425 kb on - strand, within BT1100at 1388.428 kb on + strand, within BT1100at 1388.520 kb on + strand, within BT1100at 1388.612 kb on - strand, within BT1100at 1388.645 kb on - strand, within BT1100at 1388.757 kb on - strand, within BT1100at 1388.856 kb on - strand, within BT1100at 1388.863 kb on - strand, within BT1100at 1388.897 kb on + strand, within BT1100at 1388.898 kb on - strand, within BT1100at 1388.898 kb on - strand, within BT1100at 1388.935 kb on + strand, within BT1100at 1388.940 kb on - strand, within BT1100at 1388.973 kb on + strand, within BT1100at 1388.974 kb on - strand, within BT1100at 1389.129 kb on + strandat 1389.130 kb on - strandat 1389.184 kb on - strandat 1389.205 kb on - strandat 1389.205 kb on - strandat 1389.216 kb on - strandat 1389.302 kb on - strandat 1389.306 kb on + strandat 1389.306 kb on + strandat 1389.328 kb on - strandat 1389.345 kb on + strandat 1389.384 kb on + strandat 1389.578 kb on + strand, within BT1101at 1389.603 kb on + strand, within BT1101at 1389.607 kb on + strand, within BT1101at 1389.693 kb on - strand, within BT1101at 1389.694 kb on + strand, within BT1101at 1389.835 kb on + strand, within BT1101at 1389.901 kb on + strand, within BT1101at 1389.986 kb on - strand, within BT1101at 1390.212 kb on - strand, within BT1101at 1390.212 kb on - strand, within BT1101

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Per-strain Table

Position Strand Gene LocusTag Fraction Amylopectin from Potato; autoclaved 2.5 mg/ml (C)
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1,385,697 + BT1098 0.82 -2.4
1,385,730 + BT1098 0.88 -0.7
1,385,730 + BT1098 0.88 -2.0
1,385,731 - BT1098 0.88 +0.3
1,385,825 + -0.7
1,385,827 + -1.7
1,385,979 + BT1099 0.16 -2.2
1,385,979 + BT1099 0.16 -0.2
1,386,116 + BT1099 0.33 -0.7
1,386,117 - BT1099 0.33 -0.2
1,386,234 + BT1099 0.48 +0.3
1,386,235 - BT1099 0.48 -2.2
1,386,244 - BT1099 0.49 +1.3
1,386,273 + BT1099 0.53 -1.2
1,386,274 - BT1099 0.53 +0.3
1,386,276 - BT1099 0.53 -1.4
1,386,400 + BT1099 0.68 -1.3
1,386,406 + BT1099 0.69 +0.3
1,386,407 - BT1099 0.69 +1.3
1,386,503 + BT1099 0.81 +0.3
1,386,504 - BT1099 0.81 -1.2
1,386,508 + BT1099 0.82 -2.2
1,386,534 - BT1099 0.85 +0.3
1,386,563 - BT1099 0.88 +0.3
1,386,641 + -0.9
1,386,665 - +0.9
1,386,732 - +0.1
1,386,735 + -0.7
1,386,736 - -1.1
1,386,792 + +2.9
1,386,839 + -1.9
1,386,840 - -1.7
1,386,841 + -0.8
1,386,842 - -0.9
1,386,870 + -0.7
1,386,935 + BT1100 0.10 -0.5
1,386,982 + BT1100 0.12 -1.2
1,386,997 + BT1100 0.13 +0.3
1,387,103 + BT1100 0.17 -1.2
1,387,103 + BT1100 0.17 -1.5
1,387,144 - BT1100 0.18 -1.1
1,387,226 + BT1100 0.22 -0.7
1,387,257 - BT1100 0.23 -1.2
1,387,383 + BT1100 0.28 -0.7
1,387,461 + BT1100 0.31 -1.7
1,387,477 - BT1100 0.31 +1.3
1,387,502 + BT1100 0.32 -1.7
1,387,502 + BT1100 0.32 -2.0
1,387,524 + BT1100 0.33 -2.2
1,387,529 - BT1100 0.33 -1.2
1,387,695 + BT1100 0.40 +0.3
1,387,695 + BT1100 0.40 -1.5
1,387,696 - BT1100 0.40 +0.3
1,387,696 - BT1100 0.40 -1.4
1,387,697 + BT1100 0.40 +0.3
1,387,697 + BT1100 0.40 +0.3
1,387,724 - BT1100 0.41 -1.2
1,387,727 - BT1100 0.41 +0.3
1,387,984 - BT1100 0.51 -1.1
1,387,994 - BT1100 0.52 -1.2
1,388,200 + BT1100 0.60 -0.7
1,388,200 + BT1100 0.60 -1.7
1,388,201 - BT1100 0.60 +0.3
1,388,287 + BT1100 0.63 +0.3
1,388,292 + BT1100 0.63 -0.9
1,388,312 - BT1100 0.64 -2.6
1,388,373 + BT1100 0.66 -1.7
1,388,425 - BT1100 0.68 -1.5
1,388,428 + BT1100 0.69 +1.9
1,388,520 + BT1100 0.72 -0.7
1,388,612 - BT1100 0.76 -1.2
1,388,645 - BT1100 0.77 -0.4
1,388,757 - BT1100 0.81 +0.1
1,388,856 - BT1100 0.85 -0.7
1,388,863 - BT1100 0.86 -1.2
1,388,897 + BT1100 0.87 -0.5
1,388,898 - BT1100 0.87 -0.7
1,388,898 - BT1100 0.87 -1.2
1,388,935 + BT1100 0.88 +0.3
1,388,940 - BT1100 0.89 -0.2
1,388,973 + BT1100 0.90 -1.7
1,388,974 - BT1100 0.90 -0.9
1,389,129 + -0.7
1,389,130 - -0.1
1,389,184 - -1.2
1,389,205 - +0.9
1,389,205 - -0.7
1,389,216 - -1.7
1,389,302 - -2.5
1,389,306 + +0.3
1,389,306 + +0.8
1,389,328 - -0.9
1,389,345 + -1.4
1,389,384 + -1.2
1,389,578 + BT1101 0.14 -1.0
1,389,603 + BT1101 0.16 -1.6
1,389,607 + BT1101 0.16 -0.7
1,389,693 - BT1101 0.20 -2.0
1,389,694 + BT1101 0.20 -1.2
1,389,835 + BT1101 0.26 +0.3
1,389,901 + BT1101 0.29 -0.9
1,389,986 - BT1101 0.33 -0.5
1,390,212 - BT1101 0.43 +1.1
1,390,212 - BT1101 0.43 +0.3

Or see this region's nucleotide sequence