Experiment: Amylopectin from Potato; autoclaved 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BT0924 and BT0925 are separated by 3 nucleotides BT0925 and BT0926 overlap by 8 nucleotides
BT0924: BT0924 - conserved hypothetical protein (NCBI ptt file), at 1,137,748 to 1,138,899
BT0924
BT0925: BT0925 - ABC transporter, ATP-binding protein (NCBI ptt file), at 1,138,903 to 1,139,646
BT0925
BT0926: BT0926 - ABC-type transport, permease protein (NCBI ptt file), at 1,139,639 to 1,140,595
BT0926
Position (kb)
1138
1139
1140 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 1138.061 kb on + strand, within BT0924 at 1138.318 kb on - strand, within BT0924 at 1138.371 kb on - strand, within BT0924 at 1138.602 kb on + strand, within BT0924 at 1138.742 kb on + strand, within BT0924 at 1138.842 kb on + strand at 1138.886 kb on - strand at 1138.923 kb on - strand at 1138.971 kb on - strand at 1139.044 kb on - strand, within BT0925 at 1139.170 kb on + strand, within BT0925 at 1139.273 kb on + strand, within BT0925 at 1139.312 kb on - strand, within BT0925 at 1139.323 kb on - strand, within BT0925 at 1139.427 kb on + strand, within BT0925 at 1139.510 kb on + strand, within BT0925 at 1139.522 kb on + strand, within BT0925 at 1139.740 kb on + strand, within BT0926 at 1139.740 kb on + strand, within BT0926 at 1139.746 kb on + strand, within BT0926 at 1139.773 kb on + strand, within BT0926 at 1139.836 kb on + strand, within BT0926 at 1139.989 kb on + strand, within BT0926 at 1139.996 kb on - strand, within BT0926 at 1140.035 kb on - strand, within BT0926 at 1140.180 kb on + strand, within BT0926 at 1140.181 kb on - strand, within BT0926 at 1140.257 kb on + strand, within BT0926 at 1140.258 kb on - strand, within BT0926 at 1140.450 kb on + strand, within BT0926 at 1140.538 kb on + strand at 1140.538 kb on + strand at 1140.558 kb on - strand at 1140.601 kb on + strand at 1140.602 kb on - strand at 1140.621 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Amylopectin from Potato; autoclaved 2.5 mg/ml (C) remove 1,138,061 + BT0924 0.27 -1.9 1,138,318 - BT0924 0.49 -3.1 1,138,371 - BT0924 0.54 -1.2 1,138,602 + BT0924 0.74 -1.2 1,138,742 + BT0924 0.86 -1.7 1,138,842 + -0.7 1,138,886 - -0.7 1,138,923 - -3.0 1,138,971 - -1.7 1,139,044 - BT0925 0.19 -1.2 1,139,170 + BT0925 0.36 -1.7 1,139,273 + BT0925 0.50 +0.3 1,139,312 - BT0925 0.55 -1.2 1,139,323 - BT0925 0.56 +0.3 1,139,427 + BT0925 0.70 -2.7 1,139,510 + BT0925 0.82 -1.7 1,139,522 + BT0925 0.83 +0.3 1,139,740 + BT0926 0.11 -0.7 1,139,740 + BT0926 0.11 -0.7 1,139,746 + BT0926 0.11 +0.8 1,139,773 + BT0926 0.14 +0.3 1,139,836 + BT0926 0.21 -1.7 1,139,989 + BT0926 0.37 -0.2 1,139,996 - BT0926 0.37 -0.3 1,140,035 - BT0926 0.41 -0.7 1,140,180 + BT0926 0.57 -1.7 1,140,181 - BT0926 0.57 -1.2 1,140,257 + BT0926 0.65 -1.9 1,140,258 - BT0926 0.65 +1.3 1,140,450 + BT0926 0.85 -2.3 1,140,538 + +0.3 1,140,538 + -0.9 1,140,558 - -1.2 1,140,601 + -0.7 1,140,602 - +0.9 1,140,621 + +0.3
Or see this region's nucleotide sequence