Experiment: Amylopectin from Potato; autoclaved 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BT0757 and BT0758 are separated by 223 nucleotides BT0758 and BT0759 are separated by 132 nucleotides BT0759 and BT0760 are separated by 575 nucleotides
BT0757: BT0757 - beta-galactosidase (NCBI ptt file), at 943,044 to 945,092
BT0757
BT0758: BT0758 - acetyltransferase (NCBI ptt file), at 945,316 to 945,888
BT0758
BT0759: BT0759 - hypothetical protein (NCBI ptt file), at 946,021 to 946,200
BT0759
BT0760: BT0760 - two-component system response regulator (NCBI ptt file), at 946,776 to 948,464
BT0760
Position (kb) 945
946 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 944.337 kb on + strand, within BT0757 at 944.378 kb on + strand, within BT0757 at 944.402 kb on + strand, within BT0757 at 944.489 kb on - strand, within BT0757 at 944.508 kb on - strand, within BT0757 at 944.593 kb on + strand, within BT0757 at 944.640 kb on + strand, within BT0757 at 944.651 kb on - strand, within BT0757 at 944.683 kb on - strand, within BT0757 at 944.685 kb on - strand, within BT0757 at 944.701 kb on + strand, within BT0757 at 944.708 kb on + strand, within BT0757 at 944.759 kb on + strand, within BT0757 at 944.960 kb on + strand at 944.979 kb on + strand at 945.071 kb on + strand at 945.088 kb on + strand at 945.161 kb on + strand at 945.276 kb on + strand at 945.330 kb on + strand at 945.343 kb on - strand at 945.375 kb on - strand, within BT0758 at 945.589 kb on + strand, within BT0758 at 945.606 kb on - strand, within BT0758 at 945.671 kb on + strand, within BT0758 at 946.023 kb on - strand at 946.025 kb on + strand at 946.110 kb on - strand, within BT0759 at 946.242 kb on + strand at 946.243 kb on - strand at 946.259 kb on - strand at 946.284 kb on + strand at 946.302 kb on + strand at 946.304 kb on + strand at 946.351 kb on + strand at 946.411 kb on + strand at 946.641 kb on + strand at 946.772 kb on + strand at 946.794 kb on - strand at 946.848 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Amylopectin from Potato; autoclaved 2.5 mg/ml (C) remove 944,337 + BT0757 0.63 -0.2 944,378 + BT0757 0.65 -1.9 944,402 + BT0757 0.66 -1.6 944,489 - BT0757 0.71 -0.6 944,508 - BT0757 0.71 -0.2 944,593 + BT0757 0.76 -1.4 944,640 + BT0757 0.78 +2.4 944,651 - BT0757 0.78 -1.6 944,683 - BT0757 0.80 +0.9 944,685 - BT0757 0.80 -1.2 944,701 + BT0757 0.81 -0.6 944,708 + BT0757 0.81 -1.5 944,759 + BT0757 0.84 -1.6 944,960 + -0.6 944,979 + -1.2 945,071 + +0.4 945,088 + -0.6 945,161 + -2.0 945,276 + +1.4 945,330 + -0.5 945,343 - -0.6 945,375 - BT0758 0.10 +0.4 945,589 + BT0758 0.48 -0.6 945,606 - BT0758 0.51 -3.1 945,671 + BT0758 0.62 -1.0 946,023 - -0.4 946,025 + -1.2 946,110 - BT0759 0.49 -0.2 946,242 + -0.2 946,243 - -1.6 946,259 - -1.2 946,284 + +0.4 946,302 + -2.0 946,304 + -1.2 946,351 + -0.6 946,411 + +0.4 946,641 + -0.2 946,772 + +1.7 946,794 - -0.2 946,848 - -0.6
Or see this region's nucleotide sequence