Experiment: Amylopectin from Potato; autoclaved 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BT0555 and BT0556 are separated by 27 nucleotides BT0556 and BT0557 are separated by 9 nucleotides
BT0555: BT0555 - amidophosphoribosyltransferase (NCBI ptt file), at 687,163 to 689,046
BT0555
BT0556: BT0556 - carbamoyl phosphate synthetase III (glutamine-hydrolyzing) (NCBI ptt file), at 689,074 to 690,240
BT0556
BT0557: BT0557 - carbamyl phosphate synthetase (NCBI ptt file), at 690,250 to 693,477
BT0557
Position (kb) 689
690
691 Strain fitness (log2 ratio) -2
-1
0
1 at 688.149 kb on - strand, within BT0555 at 688.213 kb on - strand, within BT0555 at 688.236 kb on - strand, within BT0555 at 688.236 kb on - strand, within BT0555 at 688.475 kb on + strand, within BT0555 at 688.475 kb on + strand, within BT0555 at 688.475 kb on + strand, within BT0555 at 688.477 kb on + strand, within BT0555 at 688.537 kb on - strand, within BT0555 at 688.555 kb on - strand, within BT0555 at 688.616 kb on + strand, within BT0555 at 688.816 kb on + strand, within BT0555 at 688.816 kb on + strand, within BT0555 at 688.816 kb on + strand, within BT0555 at 688.816 kb on + strand, within BT0555 at 689.036 kb on - strand at 689.044 kb on + strand at 689.045 kb on - strand at 689.159 kb on + strand at 689.235 kb on + strand, within BT0556 at 689.235 kb on + strand, within BT0556 at 689.490 kb on + strand, within BT0556 at 689.566 kb on + strand, within BT0556 at 689.595 kb on - strand, within BT0556 at 689.623 kb on + strand, within BT0556 at 689.646 kb on + strand, within BT0556 at 689.872 kb on - strand, within BT0556 at 689.975 kb on - strand, within BT0556 at 690.436 kb on + strand at 690.457 kb on + strand at 690.464 kb on + strand at 690.501 kb on + strand at 690.501 kb on + strand at 690.501 kb on + strand at 690.502 kb on - strand at 690.553 kb on - strand at 690.582 kb on - strand, within BT0557 at 690.594 kb on + strand, within BT0557 at 690.603 kb on - strand, within BT0557 at 690.613 kb on - strand, within BT0557 at 690.978 kb on + strand, within BT0557 at 690.978 kb on + strand, within BT0557 at 690.979 kb on - strand, within BT0557 at 691.023 kb on + strand, within BT0557 at 691.048 kb on - strand, within BT0557 at 691.085 kb on + strand, within BT0557
Per-strain Table
Position Strand Gene LocusTag Fraction Amylopectin from Potato; autoclaved 2.5 mg/ml (C) remove 688,149 - BT0555 0.52 -0.7 688,213 - BT0555 0.56 -1.7 688,236 - BT0555 0.57 -0.9 688,236 - BT0555 0.57 -1.5 688,475 + BT0555 0.70 -0.7 688,475 + BT0555 0.70 -2.1 688,475 + BT0555 0.70 -1.2 688,477 + BT0555 0.70 -1.2 688,537 - BT0555 0.73 -0.7 688,555 - BT0555 0.74 -1.7 688,616 + BT0555 0.77 +0.3 688,816 + BT0555 0.88 -2.0 688,816 + BT0555 0.88 -0.4 688,816 + BT0555 0.88 -1.7 688,816 + BT0555 0.88 -1.1 689,036 - -0.7 689,044 + -1.7 689,045 - -1.0 689,159 + -0.7 689,235 + BT0556 0.14 -1.2 689,235 + BT0556 0.14 -1.0 689,490 + BT0556 0.36 -1.5 689,566 + BT0556 0.42 -1.8 689,595 - BT0556 0.45 -1.7 689,623 + BT0556 0.47 -1.7 689,646 + BT0556 0.49 +0.3 689,872 - BT0556 0.68 -0.7 689,975 - BT0556 0.77 -1.2 690,436 + +0.3 690,457 + -1.2 690,464 + +0.3 690,501 + -1.2 690,501 + +0.3 690,501 + +0.9 690,502 - -0.7 690,553 - -1.2 690,582 - BT0557 0.10 -1.4 690,594 + BT0557 0.11 -1.2 690,603 - BT0557 0.11 +1.3 690,613 - BT0557 0.11 +0.3 690,978 + BT0557 0.23 -0.7 690,978 + BT0557 0.23 -1.5 690,979 - BT0557 0.23 -0.7 691,023 + BT0557 0.24 -1.2 691,048 - BT0557 0.25 -2.0 691,085 + BT0557 0.26 -1.0
Or see this region's nucleotide sequence