Experiment: Amylopectin from Potato; autoclaved 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BT0474 and BT0475 are separated by 13 nucleotides BT0475 and BT0476 are separated by 4 nucleotides BT0476 and BT0477 are separated by 15 nucleotides
BT0474: BT0474 - D-glycero-D-manno-heptose 1-phosphate kinase (NCBI ptt file), at 585,720 to 586,766
BT0474
BT0475: BT0475 - putative phosphoheptose isomerase (NCBI ptt file), at 586,780 to 587,373
BT0475
BT0476: BT0476 - D-mannose-1-phosphate guanyltransferase (NCBI ptt file), at 587,378 to 588,085
BT0476
BT0477: BT0477 - putative phosphatase (NCBI ptt file), at 588,101 to 588,571
BT0477
Position (kb) 586
587
588 Strain fitness (log2 ratio) -2
-1
0
1
2 at 585.789 kb on - strand at 585.841 kb on - strand, within BT0474 at 585.841 kb on - strand, within BT0474 at 585.849 kb on - strand, within BT0474 at 586.027 kb on - strand, within BT0474 at 586.068 kb on - strand, within BT0474 at 586.121 kb on - strand, within BT0474 at 586.201 kb on - strand, within BT0474 at 586.228 kb on - strand, within BT0474 at 586.230 kb on - strand, within BT0474 at 586.356 kb on - strand, within BT0474 at 586.416 kb on - strand, within BT0474 at 586.650 kb on - strand, within BT0474 at 586.673 kb on - strand at 586.710 kb on - strand at 586.771 kb on - strand at 587.038 kb on - strand, within BT0475 at 587.038 kb on - strand, within BT0475 at 587.188 kb on - strand, within BT0475 at 587.323 kb on - strand at 587.439 kb on + strand at 587.488 kb on - strand, within BT0476 at 587.607 kb on - strand, within BT0476 at 587.893 kb on - strand, within BT0476 at 587.895 kb on - strand, within BT0476 at 587.895 kb on - strand, within BT0476 at 588.148 kb on - strand, within BT0477 at 588.337 kb on - strand, within BT0477 at 588.337 kb on - strand, within BT0477
Per-strain Table
Position Strand Gene LocusTag Fraction Amylopectin from Potato; autoclaved 2.5 mg/ml (C) remove 585,789 - -0.3 585,841 - BT0474 0.12 +0.9 585,841 - BT0474 0.12 -0.5 585,849 - BT0474 0.12 -0.7 586,027 - BT0474 0.29 -2.3 586,068 - BT0474 0.33 -1.7 586,121 - BT0474 0.38 +0.3 586,201 - BT0474 0.46 -1.3 586,228 - BT0474 0.49 +0.7 586,230 - BT0474 0.49 +1.3 586,356 - BT0474 0.61 +0.9 586,416 - BT0474 0.66 -0.2 586,650 - BT0474 0.89 -1.7 586,673 - -1.3 586,710 - -1.3 586,771 - -2.0 587,038 - BT0475 0.43 -1.4 587,038 - BT0475 0.43 -1.3 587,188 - BT0475 0.69 -1.3 587,323 - -1.4 587,439 + +0.3 587,488 - BT0476 0.16 -0.7 587,607 - BT0476 0.32 +0.3 587,893 - BT0476 0.73 -0.7 587,895 - BT0476 0.73 -2.0 587,895 - BT0476 0.73 -2.1 588,148 - BT0477 0.10 -1.7 588,337 - BT0477 0.50 +1.9 588,337 - BT0477 0.50 -0.3
Or see this region's nucleotide sequence