Strain Fitness in Bacteroides thetaiotaomicron VPI-5482 around BT0371
Experiment: Amylopectin from Potato; autoclaved 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | Amylopectin from Potato; autoclaved 2.5 mg/ml (C) |
---|---|---|---|---|---|
remove | |||||
455,704 | - | BT0370 | 0.23 | -0.3 | |
455,718 | - | BT0370 | 0.24 | +0.9 | |
455,763 | - | BT0370 | 0.28 | +0.3 | |
455,784 | - | BT0370 | 0.30 | -1.4 | |
455,784 | - | BT0370 | 0.30 | +0.3 | |
455,800 | + | BT0370 | 0.31 | +0.3 | |
455,851 | + | BT0370 | 0.35 | -0.7 | |
455,979 | - | BT0370 | 0.47 | +0.3 | |
456,180 | - | BT0370 | 0.64 | +0.3 | |
456,198 | + | BT0370 | 0.66 | -0.7 | |
456,198 | + | BT0370 | 0.66 | +0.3 | |
456,203 | - | BT0370 | 0.66 | +1.3 | |
456,203 | - | BT0370 | 0.66 | -2.5 | |
456,229 | + | BT0370 | 0.68 | -0.7 | |
456,399 | + | BT0370 | 0.83 | -0.3 | |
456,400 | - | BT0370 | 0.83 | -0.3 | |
456,400 | - | BT0370 | 0.83 | +0.3 | |
456,408 | - | BT0370 | 0.84 | -0.0 | |
456,445 | + | BT0370 | 0.87 | -0.7 | |
456,445 | + | BT0370 | 0.87 | -0.7 | |
456,446 | - | BT0370 | 0.87 | -2.1 | |
456,532 | - | -2.0 | |||
456,534 | - | -2.3 | |||
456,535 | + | +0.3 | |||
456,588 | - | -2.0 | |||
457,981 | - | +0.3 | |||
458,025 | - | -0.7 | |||
458,025 | - | +0.3 | |||
458,043 | - | -0.7 | |||
458,060 | - | -2.3 | |||
458,219 | - | BT0372 | 0.20 | -1.3 | |
458,219 | - | BT0372 | 0.20 | -2.1 | |
458,297 | - | BT0372 | 0.27 | -0.3 | |
458,467 | - | BT0372 | 0.42 | -1.3 | |
458,467 | - | BT0372 | 0.42 | +0.3 | |
458,476 | - | BT0372 | 0.43 | -3.2 |
Or see this region's nucleotide sequence