Strain Fitness in Bacteroides thetaiotaomicron VPI-5482 around BT4241

Experiment: (+)-Arabinogalactan; autoclaved 2.5 mg/ml (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	(+)-Arabinogalactan; autoclaved 2.5 mg/ml (C)
5,583,076	+		BT4240	0.11	-0.5
5,583,079	+		BT4240	0.12	+0.5
5,583,096	-		BT4240	0.13	+1.5
5,583,098	-		BT4240	0.13	+0.5
5,583,126	-		BT4240	0.16	-1.8
5,583,148	+		BT4240	0.18	-0.9
5,583,162	+		BT4240	0.19	-2.8
5,583,393	+		BT4240	0.40	+0.5
5,583,415	-		BT4240	0.42	-1.3
5,583,499	+		BT4240	0.50	+1.5
5,583,500	-		BT4240	0.50	+0.5
5,583,500	-		BT4240	0.50	-1.1
5,583,513	+		BT4240	0.51	-1.1
5,583,549	+		BT4240	0.55	-1.2
5,583,550	-		BT4240	0.55	+0.5
5,583,576	-		BT4240	0.57	-1.1
5,583,626	+		BT4240	0.62	+0.2
5,583,689	-		BT4240	0.67	-0.5
5,583,689	-		BT4240	0.67	-0.1
5,583,712	-		BT4240	0.70	-0.5
5,583,855	-		BT4240	0.83	-1.1
5,583,855	-		BT4240	0.83	-1.1
5,583,913	+		BT4240	0.88	-1.7
5,583,949	+				-0.4
5,583,963	-				-0.6
5,583,984	-				-1.1
5,584,057	-				+0.5
5,584,069	-				+0.6
5,584,069	-				-0.5
5,584,086	+				-0.8
5,584,149	+				-1.0
5,584,215	-				-2.1
5,584,296	-				+1.5
5,584,533	+		BT4241	0.14	-1.1
5,584,534	-		BT4241	0.14	-0.2
5,584,534	-		BT4241	0.14	-1.6
5,584,534	-		BT4241	0.14	-0.5
5,584,540	+		BT4241	0.14	-2.3
5,584,557	+		BT4241	0.15	-0.7
5,584,557	+		BT4241	0.15	-2.5
5,584,620	+		BT4241	0.17	+0.5
5,584,621	-		BT4241	0.17	-1.3
5,584,625	+		BT4241	0.17	-1.5
5,584,631	-		BT4241	0.17	-1.5
5,584,631	-		BT4241	0.17	-1.4
5,584,821	-		BT4241	0.23	-0.1
5,584,825	+		BT4241	0.23	-0.8
5,584,826	-		BT4241	0.23	-0.1
5,584,826	-		BT4241	0.23	-1.9
5,584,827	+		BT4241	0.23	-2.7
5,584,864	-		BT4241	0.24	-1.9
5,585,170	-		BT4241	0.33	+0.5
5,585,170	-		BT4241	0.33	-1.7
5,585,170	-		BT4241	0.33	-1.4
5,585,312	+		BT4241	0.37	-0.1
5,585,360	+		BT4241	0.39	-0.5
5,585,397	-		BT4241	0.40	+0.5
5,585,403	+		BT4241	0.40	+0.5
5,585,404	-		BT4241	0.40	-1.4
5,585,408	+		BT4241	0.40	-1.2
5,585,409	-		BT4241	0.40	-0.0
5,585,551	+		BT4241	0.45	+0.5
5,585,595	-		BT4241	0.46	-1.8
5,585,613	+		BT4241	0.46	+0.5
5,585,663	+		BT4241	0.48	+0.5
5,585,677	+		BT4241	0.48	+0.5
5,585,677	+		BT4241	0.48	-0.5
5,585,677	+		BT4241	0.48	-1.5
5,585,678	-		BT4241	0.48	+2.1
5,585,680	-		BT4241	0.49	+0.5
5,585,706	+		BT4241	0.49	-1.1
5,585,707	-		BT4241	0.49	-1.1
5,585,710	+		BT4241	0.49	-0.9
5,585,710	+		BT4241	0.49	-0.8
5,585,764	-		BT4241	0.51	+0.7
5,585,764	-		BT4241	0.51	-0.1
5,585,845	-		BT4241	0.54	+0.5
5,585,880	+		BT4241	0.55	-2.2
5,585,880	+		BT4241	0.55	-1.5
5,585,880	+		BT4241	0.55	-1.3
5,585,941	-		BT4241	0.56	-1.1
5,586,069	-		BT4241	0.60	+0.5
5,586,082	+		BT4241	0.61	-1.1
5,586,083	-		BT4241	0.61	+0.6
5,586,093	+		BT4241	0.61	+0.5
5,586,094	-		BT4241	0.61	-0.5
5,586,096	+		BT4241	0.61	-0.5
5,586,198	-		BT4241	0.64	-1.5
5,586,328	+		BT4241	0.68	-0.3
5,586,329	-		BT4241	0.68	-2.3
5,586,338	+		BT4241	0.68	-2.0
5,586,338	+		BT4241	0.68	+0.5
5,586,339	-		BT4241	0.68	+0.5
5,586,342	+		BT4241	0.69	-1.3
5,586,342	+		BT4241	0.69	-0.5
5,586,342	+		BT4241	0.69	-0.5
5,586,343	-		BT4241	0.69	+0.5
5,586,430	+		BT4241	0.71	-0.3
5,586,453	-		BT4241	0.72	-0.0
5,586,494	+		BT4241	0.73	+0.5
5,586,549	+		BT4241	0.75	-0.5
5,586,550	-		BT4241	0.75	-1.1
5,586,550	-		BT4241	0.75	-0.5
5,586,575	+		BT4241	0.76	+0.5
5,586,575	+		BT4241	0.76	-1.1
5,586,666	-		BT4241	0.78	-2.1
5,586,744	+		BT4241	0.81	-0.0
5,586,745	-		BT4241	0.81	-0.9
5,586,796	-		BT4241	0.82	-1.1
5,586,830	-		BT4241	0.83	-1.1
5,586,905	+		BT4241	0.86	-2.8
5,586,924	+		BT4241	0.86	-2.0
5,586,930	+		BT4241	0.86	-0.5
5,586,930	+		BT4241	0.86	-1.1
5,586,930	+		BT4241	0.86	-1.8
5,586,930	+		BT4241	0.86	-1.1
5,586,931	-		BT4241	0.86	-0.5
5,586,931	-		BT4241	0.86	-0.4
5,586,931	-		BT4241	0.86	+0.1
5,586,931	-		BT4241	0.86	-1.1
5,586,932	+		BT4241	0.86	-0.1
5,586,963	+		BT4241	0.87	-0.8
5,586,963	+		BT4241	0.87	-1.2
5,587,112	+				-3.0
5,587,139	-				+0.5
5,587,242	+				-0.8
5,587,243	-				+0.5
5,587,245	+				-1.8
5,587,424	+				-1.7
5,587,432	-				+0.5
5,587,485	+				-1.1
5,587,558	-				-0.7
5,587,708	-		BT4242	0.27	-1.1
5,587,802	-		BT4242	0.37	+0.5
5,587,885	+		BT4242	0.46	-0.5
5,587,886	-		BT4242	0.47	+0.9
5,587,896	-		BT4242	0.48	-2.1
5,588,152	-				+0.5
5,588,162	+		BT4242	0.78	-1.3
5,588,166	+		BT4242	0.78	-0.5
5,588,166	+		BT4242	0.78	+0.5
5,588,168	+		BT4242	0.78	+1.5
5,588,169	-		BT4242	0.78	-0.5
5,588,202	+		BT4242	0.82	-2.1
5,588,203	-		BT4242	0.82	-2.5
5,588,364	-				-0.4
5,588,374	-				-1.5
5,588,374	-				-1.1
5,588,377	-				-1.4