Strain Fitness in Bacteroides thetaiotaomicron VPI-5482 around BT3282

Experiment: (+)-Arabinogalactan; autoclaved 2.5 mg/ml (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	(+)-Arabinogalactan; autoclaved 2.5 mg/ml (C)
4,196,562	-				-1.4
4,196,606	+				-1.2
4,196,606	+				-0.4
4,196,607	-				-1.8
4,196,630	+				-1.2
4,196,631	-				-1.0
4,196,631	-				-1.2
4,196,631	-				-0.8
4,196,631	-				+2.1
4,196,638	+				-2.6
4,196,646	-				-1.5
4,196,687	-				-0.4
4,196,757	-		BT3281	0.15	-0.0
4,196,757	-		BT3281	0.15	-2.0
4,196,778	+		BT3281	0.18	+0.5
4,196,792	+		BT3281	0.19	-1.5
4,196,794	+		BT3281	0.19	-1.5
4,196,849	+		BT3281	0.26	-2.6
4,196,855	-		BT3281	0.26	-1.7
4,196,918	-		BT3281	0.33	-1.5
4,196,974	+		BT3281	0.39	+0.2
4,196,975	-		BT3281	0.40	-1.6
4,197,027	+		BT3281	0.45	+0.5
4,197,032	+		BT3281	0.46	-1.0
4,197,033	-		BT3281	0.46	+1.5
4,197,044	+		BT3281	0.47	-1.4
4,197,045	-		BT3281	0.47	-1.6
4,197,052	+		BT3281	0.48	+1.5
4,197,052	+		BT3281	0.48	-0.5
4,197,053	-		BT3281	0.48	-1.3
4,197,053	-		BT3281	0.48	-0.9
4,197,056	+		BT3281	0.49	-0.8
4,197,056	+		BT3281	0.49	-2.3
4,197,141	+		BT3281	0.58	-1.5
4,197,141	+		BT3281	0.58	-0.9
4,197,141	+		BT3281	0.58	-2.3
4,197,142	-				-1.0
4,197,194	+		BT3281	0.64	+0.1
4,197,279	+		BT3281	0.73	-2.3
4,197,290	+		BT3281	0.75	-1.0
4,197,290	+		BT3281	0.75	+0.5
4,197,291	-		BT3281	0.75	-0.4
4,197,457	-				-1.0
4,197,477	-				+0.3
4,197,477	-				-2.9
4,197,516	+				-1.5
4,197,524	-				-0.9
4,197,537	+				-2.0
4,197,537	+				-1.8
4,197,538	-				-1.8
4,197,558	-				+0.5
4,197,558	-				+0.5
4,197,558	-				-1.8
4,197,560	+				-1.2
4,197,560	+				-0.7
4,197,561	-				+0.5
4,197,747	-				-0.2
4,197,762	+				-0.9
4,197,783	+				-1.0
4,197,784	-				-1.9
4,197,843	+		BT3282	0.12	-0.5
4,197,843	+		BT3282	0.12	+0.5
4,197,843	+		BT3282	0.12	-2.0
4,197,850	-		BT3282	0.12	-1.5
4,197,851	+		BT3282	0.12	+0.5
4,197,887	+		BT3282	0.14	-0.5
4,197,964	-		BT3282	0.17	+0.5
4,197,967	+		BT3282	0.17	-1.7
4,197,967	+		BT3282	0.17	-0.5
4,197,968	-		BT3282	0.17	+1.5
4,198,012	+		BT3282	0.19	-1.3
4,198,013	-		BT3282	0.19	+0.4
4,198,014	+		BT3282	0.19	-2.5
4,198,014	+		BT3282	0.19	-0.6
4,198,015	-		BT3282	0.19	-1.4
4,198,015	-		BT3282	0.19	-1.0
4,198,015	-		BT3282	0.19	+0.5
4,198,015	-		BT3282	0.19	-1.1
4,198,019	+		BT3282	0.19	-0.5
4,198,020	-		BT3282	0.19	-2.1
4,198,049	-		BT3282	0.20	-1.0
4,198,049	-		BT3282	0.20	-1.1
4,198,060	-		BT3282	0.20	+1.1
4,198,086	-		BT3282	0.21	+0.5
4,198,119	-		BT3282	0.23	-2.0
4,198,127	+		BT3282	0.23	-0.8
4,198,127	+		BT3282	0.23	-2.0
4,198,128	-		BT3282	0.23	-0.5
4,198,128	-		BT3282	0.23	-1.5
4,198,128	-		BT3282	0.23	-0.7
4,198,128	-		BT3282	0.23	-0.2
4,198,209	+		BT3282	0.26	+0.5
4,198,234	+		BT3282	0.27	-2.0
4,198,263	-		BT3282	0.28	+0.5
4,198,281	+		BT3282	0.29	-1.0
4,198,302	+		BT3282	0.30	+0.5
4,198,361	-		BT3282	0.32	-1.5
4,198,392	+		BT3282	0.33	-2.0
4,198,396	+		BT3282	0.34	-0.8
4,198,484	+		BT3282	0.37	-0.5
4,198,487	-		BT3282	0.37	-1.3
4,198,490	-		BT3282	0.37	-2.0
4,198,529	+		BT3282	0.39	+1.0
4,198,618	-		BT3282	0.42	-0.5
4,198,639	-		BT3282	0.43	+2.1
4,198,639	-		BT3282	0.43	-0.2
4,198,642	-		BT3282	0.43	-0.5
4,198,755	+		BT3282	0.48	-1.5
4,198,797	+		BT3282	0.49	+0.5
4,198,797	+		BT3282	0.49	-1.5
4,198,798	-		BT3282	0.49	+1.5
4,198,857	-		BT3282	0.52	-1.5
4,198,861	+		BT3282	0.52	-2.5
4,198,862	-		BT3282	0.52	-0.5
4,198,866	-		BT3282	0.52	-1.6
4,198,887	+		BT3282	0.53	-0.0
4,198,921	+		BT3282	0.54	-1.0
4,198,921	+		BT3282	0.54	+0.5
4,198,921	+		BT3282	0.54	-0.0
4,198,922	-		BT3282	0.54	-0.5
4,198,970	-		BT3282	0.56	-1.5
4,198,974	+		BT3282	0.56	-1.2
4,198,975	-		BT3282	0.56	-2.3
4,198,997	-		BT3282	0.57	+1.5
4,199,007	+		BT3282	0.58	-1.0
4,199,066	+		BT3282	0.60	+0.5
4,199,067	-		BT3282	0.60	+0.5
4,199,067	-		BT3282	0.60	-0.9
4,199,097	+		BT3282	0.61	-1.8
4,199,097	+		BT3282	0.61	-1.3
4,199,098	-		BT3282	0.61	-0.5
4,199,098	-		BT3282	0.61	-0.7
4,199,104	-		BT3282	0.61	-0.3
4,199,272	+		BT3282	0.68	+1.5
4,199,273	-		BT3282	0.68	-0.0
4,199,323	+		BT3282	0.70	-1.5
4,199,323	+		BT3282	0.70	+0.5
4,199,323	+		BT3282	0.70	+0.8
4,199,363	-		BT3282	0.72	-2.9
4,199,392	+		BT3282	0.73	+1.5
4,199,523	+		BT3282	0.78	-1.4
4,199,570	-		BT3282	0.80	+1.1
4,199,613	+		BT3282	0.81	-0.8
4,199,614	-		BT3282	0.81	-0.0
4,199,636	-		BT3282	0.82	-0.6
4,199,636	-		BT3282	0.82	-0.3
4,199,640	+		BT3282	0.82	-1.6
4,199,702	-		BT3282	0.85	+1.5
4,199,703	+		BT3282	0.85	-0.0
4,199,703	+		BT3282	0.85	-0.9
4,199,712	+		BT3282	0.85	-0.2
4,199,760	+		BT3282	0.87	+0.5
4,199,764	+		BT3282	0.87	+0.5
4,199,765	-		BT3282	0.87	-0.3
4,199,784	+		BT3282	0.88	+0.5
4,199,851	-				-0.5
4,199,975	+				-1.0
4,199,976	-				+0.3
4,199,986	+				+2.1
4,199,987	-				-0.7
4,199,988	+				-1.0
4,199,989	-				+0.2
4,199,989	-				+0.5
4,200,025	-				+0.5
4,200,086	-				-0.7
4,200,089	+				+0.5
4,200,167	+				-1.6
4,200,183	-				-0.5
4,200,652	-				+1.5
4,200,921	-		BT3284	0.25	-2.2
4,200,961	-		BT3284	0.28	-0.0