Strain Fitness in Bacteroides thetaiotaomicron VPI-5482 around BT2112

Experiment: (+)-Arabinogalactan; autoclaved 2.5 mg/ml (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	(+)-Arabinogalactan; autoclaved 2.5 mg/ml (C)
2,655,159	+		BT2111	0.70	-2.1
2,655,229	+		BT2111	0.72	-0.6
2,655,229	+		BT2111	0.72	-1.6
2,655,230	-		BT2111	0.72	-1.2
2,655,392	-		BT2111	0.77	+2.0
2,655,456	+		BT2111	0.79	-1.1
2,655,457	-		BT2111	0.79	-0.6
2,655,466	+		BT2111	0.80	-0.6
2,655,467	-		BT2111	0.80	-2.1
2,655,471	-		BT2111	0.80	-2.5
2,655,598	+		BT2111	0.84	-2.4
2,655,599	-		BT2111	0.84	-0.3
2,655,599	-		BT2111	0.84	-1.4
2,655,600	+		BT2111	0.84	-0.0
2,655,600	+		BT2111	0.84	-1.5
2,655,601	-		BT2111	0.84	-4.0
2,655,635	+		BT2111	0.85	-1.1
2,655,993	-				+1.4
2,656,103	-				-2.1
2,656,152	-				+0.4
2,656,171	+				-2.4
2,656,206	+				-1.8
2,656,208	+				-1.8
2,656,209	-				+1.4
2,656,278	-		BT2112	0.14	-1.0
2,656,279	+		BT2112	0.15	+0.4
2,656,279	+		BT2112	0.15	-0.9
2,656,283	-		BT2112	0.15	-1.3
2,656,283	-		BT2112	0.15	-0.6
2,656,319	+		BT2112	0.18	+2.0
2,656,399	-		BT2112	0.26	+0.4
2,656,429	-		BT2112	0.29	-1.7
2,656,505	+		BT2112	0.36	+0.4
2,656,511	+		BT2112	0.37	-0.7
2,656,702	-		BT2112	0.55	-0.4
2,656,707	-		BT2112	0.56	+0.4
2,656,707	-		BT2112	0.56	-1.1
2,656,736	-		BT2112	0.59	+0.4
2,656,738	-		BT2112	0.59	-0.6
2,656,738	-		BT2112	0.59	+0.4
2,656,761	+		BT2112	0.61	+0.4
2,656,762	-		BT2112	0.61	+0.8
2,656,845	+		BT2112	0.69	-0.6
2,656,846	-		BT2112	0.69	+0.4
2,656,849	-		BT2112	0.69	-0.6
2,656,849	-		BT2112	0.69	-0.8
2,656,952	-		BT2112	0.79	-0.9
2,656,977	+		BT2112	0.82	-2.1
2,656,978	-		BT2112	0.82	-0.6
2,656,997	-		BT2112	0.84	+0.4
2,656,997	-		BT2112	0.84	-0.1
2,657,025	+		BT2112	0.86	-0.3
2,657,025	+		BT2112	0.86	-1.1
2,657,026	-		BT2112	0.87	+0.4
2,657,026	-		BT2112	0.87	-2.0
2,657,029	+		BT2112	0.87	-1.6
2,657,051	+				-1.6
2,657,076	+				+2.0
2,657,076	+				-1.1
2,657,076	+				-0.6
2,657,090	+				-1.1
2,657,121	-				-1.6
2,657,154	+				+0.4
2,657,155	-				-1.9
2,657,185	+				+2.4
2,657,336	-				-0.8
2,657,371	+				+0.4
2,657,431	-				-1.1
2,657,514	-				-2.1
2,657,661	-		BT2113	0.13	-2.4
2,657,749	+		BT2113	0.16	-1.6
2,657,819	+		BT2113	0.18	-1.6
2,657,841	-		BT2113	0.18	-1.2
2,657,960	+		BT2113	0.22	-0.5
2,657,960	+		BT2113	0.22	-2.6
2,657,961	-		BT2113	0.22	+2.0
2,657,961	-		BT2113	0.22	-0.6
2,658,101	+		BT2113	0.26	-0.6
2,658,102	-		BT2113	0.26	-1.3
2,658,129	+		BT2113	0.27	-0.6
2,658,130	-		BT2113	0.27	-1.9
2,658,131	+		BT2113	0.27	-1.1
2,658,132	-		BT2113	0.27	-2.4
2,658,132	-		BT2113	0.27	-0.9
2,658,132	-		BT2113	0.27	-1.1