Experiment: (+)-Arabinogalactan; autoclaved 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BT0294 and BT0295 are separated by 268 nucleotides BT0295 and BT0296 are separated by 15 nucleotides
BT0294: BT0294 - hypothetical protein (NCBI ptt file), at 343,140 to 344,570
BT0294
BT0295: BT0295 - ABC transporter ATP-binding protein (NCBI ptt file), at 344,839 to 345,732
BT0295
BT0296: BT0296 - putative xanthan lyase XalB precursor (NCBI ptt file), at 345,748 to 349,053
BT0296
Position (kb) 344
345
346 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 343.947 kb on - strand, within BT0294 at 343.951 kb on + strand, within BT0294 at 343.955 kb on + strand, within BT0294 at 344.034 kb on + strand, within BT0294 at 344.035 kb on - strand, within BT0294 at 344.043 kb on - strand, within BT0294 at 344.243 kb on - strand, within BT0294 at 344.285 kb on + strand, within BT0294 at 344.366 kb on + strand, within BT0294 at 344.388 kb on - strand, within BT0294 at 344.403 kb on - strand, within BT0294 at 344.426 kb on + strand, within BT0294 at 344.452 kb on - strand at 344.453 kb on + strand at 344.456 kb on + strand at 344.460 kb on - strand at 344.494 kb on - strand at 344.515 kb on - strand at 344.653 kb on - strand at 344.707 kb on + strand at 344.708 kb on - strand at 344.749 kb on - strand at 344.799 kb on - strand at 344.863 kb on - strand at 344.863 kb on - strand at 344.940 kb on - strand, within BT0295 at 344.970 kb on - strand, within BT0295 at 345.229 kb on + strand, within BT0295 at 345.230 kb on - strand, within BT0295 at 345.230 kb on - strand, within BT0295 at 345.230 kb on - strand, within BT0295 at 345.288 kb on - strand, within BT0295 at 345.288 kb on - strand, within BT0295 at 345.400 kb on - strand, within BT0295 at 345.409 kb on - strand, within BT0295 at 345.445 kb on - strand, within BT0295 at 345.618 kb on - strand, within BT0295 at 345.646 kb on + strand at 345.695 kb on - strand at 345.757 kb on - strand at 345.758 kb on + strand at 345.758 kb on + strand at 345.758 kb on + strand at 345.762 kb on + strand at 345.910 kb on - strand at 345.935 kb on - strand at 345.973 kb on - strand at 345.979 kb on - strand at 346.067 kb on - strand at 346.092 kb on + strand, within BT0296 at 346.122 kb on + strand, within BT0296 at 346.125 kb on + strand, within BT0296 at 346.212 kb on + strand, within BT0296 at 346.297 kb on + strand, within BT0296 at 346.299 kb on + strand, within BT0296 at 346.309 kb on - strand, within BT0296 at 346.318 kb on + strand, within BT0296 at 346.352 kb on - strand, within BT0296 at 346.353 kb on + strand, within BT0296 at 346.354 kb on - strand, within BT0296 at 346.362 kb on + strand, within BT0296 at 346.363 kb on - strand, within BT0296 at 346.510 kb on - strand, within BT0296 at 346.510 kb on - strand, within BT0296 at 346.576 kb on - strand, within BT0296 at 346.578 kb on - strand, within BT0296 at 346.578 kb on - strand, within BT0296 at 346.637 kb on - strand, within BT0296 at 346.670 kb on - strand, within BT0296
Per-strain Table
Position Strand Gene LocusTag Fraction (+)-Arabinogalactan; autoclaved 2.5 mg/ml (C) remove 343,947 - BT0294 0.56 -0.7 343,951 + BT0294 0.57 +0.3 343,955 + BT0294 0.57 +1.3 344,034 + BT0294 0.62 -2.3 344,035 - BT0294 0.63 -1.5 344,043 - BT0294 0.63 +1.9 344,243 - BT0294 0.77 +1.3 344,285 + BT0294 0.80 -0.7 344,366 + BT0294 0.86 +1.3 344,388 - BT0294 0.87 -0.1 344,403 - BT0294 0.88 -0.3 344,426 + BT0294 0.90 +0.3 344,452 - -0.8 344,453 + +0.3 344,456 + +0.3 344,460 - +0.3 344,494 - -1.3 344,515 - -1.7 344,653 - -1.4 344,707 + -0.7 344,708 - -2.0 344,749 - +0.3 344,799 - +0.1 344,863 - -2.0 344,863 - -0.3 344,940 - BT0295 0.11 -2.7 344,970 - BT0295 0.15 -1.7 345,229 + BT0295 0.44 -3.1 345,230 - BT0295 0.44 -2.0 345,230 - BT0295 0.44 -0.7 345,230 - BT0295 0.44 +0.3 345,288 - BT0295 0.50 -2.0 345,288 - BT0295 0.50 -0.9 345,400 - BT0295 0.63 -1.5 345,409 - BT0295 0.64 -2.3 345,445 - BT0295 0.68 -1.9 345,618 - BT0295 0.87 -2.3 345,646 + -0.7 345,695 - -1.4 345,757 - -2.7 345,758 + -0.7 345,758 + -3.7 345,758 + -1.8 345,762 + -2.0 345,910 - +0.3 345,935 - -1.8 345,973 - -0.3 345,979 - -0.7 346,067 - -0.9 346,092 + BT0296 0.10 +0.0 346,122 + BT0296 0.11 -1.5 346,125 + BT0296 0.11 +0.3 346,212 + BT0296 0.14 -1.4 346,297 + BT0296 0.17 -0.8 346,299 + BT0296 0.17 -1.3 346,309 - BT0296 0.17 -0.7 346,318 + BT0296 0.17 -2.0 346,352 - BT0296 0.18 -0.7 346,353 + BT0296 0.18 -1.7 346,354 - BT0296 0.18 -2.1 346,362 + BT0296 0.19 +0.8 346,363 - BT0296 0.19 +0.3 346,510 - BT0296 0.23 +0.3 346,510 - BT0296 0.23 -0.3 346,576 - BT0296 0.25 -1.5 346,578 - BT0296 0.25 -0.3 346,578 - BT0296 0.25 -2.3 346,637 - BT0296 0.27 -1.6 346,670 - BT0296 0.28 -1.7
Or see this region's nucleotide sequence