Strain Fitness in Bacteroides thetaiotaomicron VPI-5482 around BT3077

Experiment: (+)-Arabinogalactan; autoclaved 2.5 mg/ml (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	(+)-Arabinogalactan; autoclaved 2.5 mg/ml (C)
3,899,370	+		BT3075	0.28	-0.3
3,899,381	+		BT3075	0.29	-2.5
3,899,381	+		BT3075	0.29	-1.6
3,899,382	-		BT3075	0.29	-0.5
3,899,383	+		BT3075	0.29	-1.2
3,899,384	-		BT3075	0.29	-1.5
3,899,384	-		BT3075	0.29	+0.7
3,899,384	-		BT3075	0.29	-1.3
3,899,417	+		BT3075	0.33	-0.8
3,899,467	-		BT3075	0.38	-0.3
3,899,467	-		BT3075	0.38	-2.5
3,899,570	-		BT3075	0.48	-2.9
3,899,570	-		BT3075	0.48	-0.3
3,899,579	+		BT3075	0.49	+0.1
3,899,580	-		BT3075	0.49	-0.3
3,899,580	-		BT3075	0.49	-0.3
3,899,587	+		BT3075	0.50	-1.5
3,899,591	+		BT3075	0.50	-1.7
3,899,637	-		BT3075	0.54	-0.9
3,899,645	+		BT3075	0.55	-1.6
3,899,646	-		BT3075	0.55	-0.6
3,899,653	+		BT3075	0.56	+0.7
3,899,660	+		BT3075	0.57	-0.9
3,899,688	+		BT3075	0.60	+0.3
3,899,698	+		BT3075	0.61	-0.9
3,899,735	+		BT3075	0.64	-2.6
3,899,743	+		BT3075	0.65	+1.7
3,899,766	-		BT3075	0.67	+0.7
3,899,783	+		BT3075	0.69	-3.1
3,899,789	+		BT3075	0.70	-1.3
3,899,789	+		BT3075	0.70	-0.9
3,899,809	+		BT3075	0.72	-0.9
3,899,818	+		BT3075	0.72	-0.3
3,899,818	+		BT3075	0.72	-1.1
3,899,818	+		BT3075	0.72	+0.7
3,899,870	+		BT3075	0.78	-1.5
3,899,871	-		BT3075	0.78	+0.7
3,899,882	+		BT3075	0.79	-1.5
3,899,883	-		BT3075	0.79	-0.3
3,899,887	+		BT3075	0.79	-0.9
3,899,888	-		BT3075	0.79	-0.6
3,899,978	-		BT3075	0.88	-1.6
3,900,030	+				-1.6
3,900,082	-				-2.1
3,900,082	-				-0.6
3,900,114	-				-0.3
3,900,114	-				-1.3
3,900,146	-				-0.9
3,900,146	-				-0.5
3,900,146	-				-0.9
3,900,146	-				-1.3
3,900,216	+				-0.1
3,900,216	+				-0.7
3,900,217	-				+0.4
3,900,217	-				-1.0
3,900,253	-		BT3076	0.25	-0.9
3,900,353	+		BT3076	0.76	+1.7
3,901,912	-		BT3077	0.72	+0.7
3,902,513	+				+0.7
3,902,523	+				-0.3
3,902,523	+				-2.9
3,902,539	+				-0.9
3,902,542	+				+0.2
3,902,542	+				-1.1
3,902,546	-				+0.7
3,902,595	+				-0.3
3,902,595	+				-1.3
3,902,596	-				+0.7
3,902,648	-				-0.2
3,902,660	+				-1.5
3,902,708	+				+0.1
3,902,734	+		BT3078	0.15	-2.2
3,902,763	+		BT3078	0.21	-1.0
3,902,763	+		BT3078	0.21	+1.7
3,902,764	-		BT3078	0.21	-0.3
3,902,764	-		BT3078	0.21	-1.3
3,902,767	+		BT3078	0.21	-0.2
3,902,768	-		BT3078	0.22	+1.7
3,902,774	+		BT3078	0.23	-0.9
3,902,774	+		BT3078	0.23	-0.3
3,902,867	+		BT3078	0.42	-2.4
3,902,915	-		BT3078	0.52	-0.3
3,902,925	+		BT3078	0.54	-1.5
3,902,926	-		BT3078	0.55	-0.3
3,902,926	-		BT3078	0.55	-0.3
3,902,931	-		BT3078	0.56	-1.0
3,902,965	+		BT3078	0.63	+0.7
3,902,982	-		BT3078	0.66	-0.9
3,903,011	+		BT3078	0.72	+0.7
3,903,012	-		BT3078	0.72	+1.7
3,903,197	+				-1.2
3,903,198	-				-0.5
3,903,217	+				+0.9
3,903,218	-				-0.6
3,903,220	+				-1.2
3,903,221	-				-0.3
3,903,239	+				-1.8
3,903,240	-				+0.7
3,903,240	-				-1.9
3,903,240	-				-0.9
3,903,258	+				+0.7
3,903,258	+				-1.6
3,903,259	-				-1.3
3,903,308	+				-1.5
3,903,309	-				-0.9
3,903,310	+				-2.9
3,903,320	+				-0.9
3,903,321	-				-3.0
3,903,327	-				-1.0
3,903,347	-				-0.3
3,903,351	-				-0.4
3,903,385	+				-1.0
3,903,386	-				-0.3
3,903,421	+				-1.3
3,903,429	+				-0.5
3,903,454	-				-2.3
3,903,472	+				-1.7
3,903,472	+				-1.7
3,903,472	+				+0.1
3,903,473	-				-1.6
3,903,473	-				+0.7
3,903,476	+				+0.7
3,903,476	+				+0.1
3,903,493	+				-0.3
3,903,494	-				-1.0
3,903,494	-				+0.1
3,903,507	+		BT3079	0.11	-0.3
3,903,507	+		BT3079	0.11	-3.1