Strain Fitness in Bacteroides thetaiotaomicron VPI-5482 around BT2816

Experiment: (+)-Arabinogalactan; autoclaved 2.5 mg/ml (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	(+)-Arabinogalactan; autoclaved 2.5 mg/ml (C)
3,496,612	-				-0.3
3,496,612	-				-2.3
3,496,647	+				-1.9
3,496,682	+				-1.3
3,496,682	+				-2.9
3,496,682	+				+0.7
3,496,688	+				-0.9
3,496,688	+				-1.9
3,496,691	+				-1.8
3,496,692	-				-0.3
3,496,692	-				-1.5
3,496,708	+				-0.8
3,496,754	+				-1.2
3,496,780	+				+0.7
3,496,783	-				+2.0
3,496,823	+				-2.1
3,496,904	+		BT2815	0.21	-0.2
3,497,065	-		BT2815	0.51	-0.9
3,497,102	+		BT2815	0.58	-0.3
3,497,126	+		BT2815	0.63	-0.3
3,497,127	-		BT2815	0.63	+0.7
3,497,129	-		BT2815	0.63	-2.6
3,497,152	+		BT2815	0.68	-1.6
3,497,181	+		BT2815	0.73	+1.1
3,497,295	+				+0.1
3,497,318	+				-0.9
3,497,387	-				-2.2
3,497,387	-				-1.9
3,497,407	+				-2.1
3,497,407	+				-1.3
3,497,408	-				-0.9
3,497,414	-				-0.7
3,497,449	-				-1.3
3,497,452	+				-0.6
3,497,453	-				-0.3
3,497,491	-				-0.3
3,497,495	-				-2.7
3,497,581	+				-1.5
3,497,714	+				-3.1
3,497,715	-				-3.1
3,497,716	+				-2.6
3,497,764	-				-3.2
3,497,825	+				-1.1
3,497,825	+				-3.2
3,497,827	+				-2.5
3,497,827	+				-0.3
3,497,827	+				-1.4
3,497,827	+				-1.5
3,497,827	+				-2.4
3,497,828	-				-4.0
3,497,828	-				+0.7
3,497,877	+				-1.3
3,497,937	+		BT2816	0.11	-2.3
3,497,952	-		BT2816	0.11	-0.3
3,497,957	+		BT2816	0.11	+0.7
3,497,958	-		BT2816	0.11	-2.0
3,498,013	-		BT2816	0.13	+0.2
3,498,045	-		BT2816	0.14	+0.7
3,498,062	+		BT2816	0.15	+0.7
3,498,062	+		BT2816	0.15	-2.5
3,498,077	-		BT2816	0.15	-3.2
3,498,111	+		BT2816	0.17	-2.5
3,498,112	-		BT2816	0.17	+0.7
3,498,131	+		BT2816	0.17	-0.9
3,498,150	+		BT2816	0.18	-1.6
3,498,161	+		BT2816	0.18	-0.3
3,498,234	-		BT2816	0.21	-2.5
3,498,251	+		BT2816	0.21	-1.6
3,498,251	+		BT2816	0.21	-1.3
3,498,254	+		BT2816	0.21	-0.9
3,498,254	+		BT2816	0.21	-0.3
3,498,258	+		BT2816	0.21	-1.8
3,498,259	-		BT2816	0.21	-2.5
3,498,259	-		BT2816	0.21	-0.3
3,498,259	-		BT2816	0.21	-0.9
3,498,269	+		BT2816	0.22	-0.0
3,498,270	-		BT2816	0.22	-1.0
3,498,318	-		BT2816	0.23	-3.7
3,498,381	-		BT2816	0.26	+0.7
3,498,381	-		BT2816	0.26	-0.9
3,498,381	-		BT2816	0.26	-3.5
3,498,470	+		BT2816	0.28	-1.3
3,498,471	-		BT2816	0.29	-0.3
3,498,488	+		BT2816	0.29	-0.9
3,498,492	-		BT2816	0.29	-0.3
3,498,572	+		BT2816	0.32	-2.6
3,498,573	-		BT2816	0.32	-0.3
3,498,593	+		BT2816	0.33	-1.5
3,498,594	-		BT2816	0.33	-0.7
3,498,625	+		BT2816	0.34	-4.0
3,498,626	-		BT2816	0.34	-0.9
3,498,693	-		BT2816	0.36	-0.9
3,498,719	+		BT2816	0.37	-3.0
3,498,798	+		BT2816	0.39	-1.9
3,498,799	-		BT2816	0.39	-3.5
3,498,806	+		BT2816	0.40	-1.9
3,498,813	+		BT2816	0.40	+0.7
3,498,822	-		BT2816	0.40	-2.9
3,498,825	+		BT2816	0.40	+0.7
3,498,825	+		BT2816	0.40	-2.8
3,498,825	+		BT2816	0.40	-0.3
3,498,826	-		BT2816	0.40	-2.3
3,498,829	+		BT2816	0.40	+1.7
3,498,840	-		BT2816	0.41	-2.1
3,498,852	+		BT2816	0.41	+0.0
3,499,002	-		BT2816	0.46	-0.9
3,499,028	+		BT2816	0.47	-0.3
3,499,028	+		BT2816	0.47	+0.1
3,499,031	+		BT2816	0.47	-2.8
3,499,032	-		BT2816	0.47	-1.1
3,499,050	-		BT2816	0.48	-0.3
3,499,133	+		BT2816	0.50	-2.6
3,499,134	-		BT2816	0.51	+1.1
3,499,155	+		BT2816	0.51	+0.7
3,499,156	-		BT2816	0.51	-0.3
3,499,156	-		BT2816	0.51	-2.3
3,499,160	+		BT2816	0.51	-1.6
3,499,161	-		BT2816	0.51	+0.1
3,499,184	+		BT2816	0.52	-1.6
3,499,262	+		BT2816	0.55	-1.0
3,499,323	-		BT2816	0.57	+0.7
3,499,323	-		BT2816	0.57	-1.3
3,499,345	+		BT2816	0.58	-2.3
3,499,346	-		BT2816	0.58	-2.8
3,499,362	-		BT2816	0.58	+0.3
3,499,371	-		BT2816	0.58	-2.2
3,499,371	-				+0.7
3,499,407	-		BT2816	0.60	-0.3
3,499,448	+		BT2816	0.61	-2.5
3,499,449	-		BT2816	0.61	+0.1
3,499,449	-		BT2816	0.61	-0.3
3,499,499	+		BT2816	0.63	+2.3
3,499,500	-		BT2816	0.63	-1.3
3,499,503	+		BT2816	0.63	-2.5
3,499,503	+		BT2816	0.63	-0.6
3,499,504	-		BT2816	0.63	-0.5
3,499,528	+		BT2816	0.64	-2.6
3,499,529	-		BT2816	0.64	-3.0
3,499,531	+		BT2816	0.64	-3.0
3,499,611	-		BT2816	0.66	-1.3
3,499,650	-		BT2816	0.68	-2.1
3,499,671	-		BT2816	0.68	-3.1
3,499,717	+		BT2816	0.70	-3.2
3,499,717	+		BT2816	0.70	-1.3
3,499,722	-		BT2816	0.70	-1.9
3,499,725	+		BT2816	0.70	-2.5
3,499,813	+		BT2816	0.73	-0.9
3,499,814	-		BT2816	0.73	-4.2
3,499,817	+		BT2816	0.73	-1.1
3,499,838	+		BT2816	0.74	+0.7
3,499,912	+		BT2816	0.76	+0.7
3,499,929	-		BT2816	0.77	-1.6
3,499,931	+		BT2816	0.77	-2.3
3,499,931	+		BT2816	0.77	-2.6
3,499,932	-		BT2816	0.77	-0.9
3,499,965	-		BT2816	0.78	+0.7
3,499,965	-		BT2816	0.78	-2.1
3,499,965	-		BT2816	0.78	-2.6
3,499,967	-		BT2816	0.78	+0.7
3,499,969	+		BT2816	0.78	-1.3
3,499,969	+		BT2816	0.78	-2.1
3,499,969	+		BT2816	0.78	-0.3
3,499,970	-		BT2816	0.78	-0.3
3,499,970	-		BT2816	0.78	-0.3
3,499,970	-		BT2816	0.78	-1.3
3,500,053	-		BT2816	0.81	-4.0
3,500,093	+		BT2816	0.82	-2.4
3,500,094	-		BT2816	0.82	-0.5
3,500,125	-		BT2816	0.83	+0.4
3,500,187	+		BT2816	0.85	-3.2
3,500,187	+		BT2816	0.85	-2.1
3,500,187	+		BT2816	0.85	-0.9
3,500,279	+		BT2816	0.89	+0.7
3,500,463	-				-3.0
3,500,463	-				-0.3
3,500,499	+				-1.3
3,500,501	+				-0.3
3,500,502	-				-2.3
3,500,502	-				+1.7
3,500,537	+				-1.9
3,500,561	+				-1.4
3,500,605	-				-4.1
3,500,651	+				-0.9
3,500,651	+				-3.2
3,500,652	-				-3.0
3,500,654	-				-2.5
3,500,655	+				-1.3
3,500,655	+				-2.1
3,500,656	-				-2.3
3,500,656	-				-3.3
3,500,656	-				-3.6
3,500,669	-				-3.2
3,500,763	-				-0.3
3,500,765	-				+0.7
3,500,847	-		BT2817	0.12	+0.7
3,500,875	+		BT2817	0.14	-1.8
3,500,900	+		BT2817	0.15	-0.2
3,500,901	-		BT2817	0.15	+0.7
3,500,901	-		BT2817	0.15	+0.7
3,500,901	-		BT2817	0.15	-1.9
3,500,905	-		BT2817	0.16	-1.3
3,500,905	-		BT2817	0.16	-2.0
3,500,940	-		BT2817	0.18	+0.7
3,500,940	-		BT2817	0.18	-4.5
3,500,940	-		BT2817	0.18	-2.4
3,500,942	-		BT2817	0.18	-3.0
3,500,942	-		BT2817	0.18	-0.9
3,500,963	+		BT2817	0.19	-1.1
3,500,991	-		BT2817	0.21	-4.3
3,501,095	+		BT2817	0.27	-0.9
3,501,098	+		BT2817	0.27	-2.9
3,501,125	+		BT2817	0.28	-0.3
3,501,128	-		BT2817	0.29	-3.0
3,501,147	+		BT2817	0.30	-2.4
3,501,270	-		BT2817	0.37	-0.3
3,501,276	+		BT2817	0.37	-2.5
3,501,276	+		BT2817	0.37	-1.3
3,501,437	-		BT2817	0.47	-2.9
3,501,452	-		BT2817	0.47	-1.1
3,501,483	+		BT2817	0.49	-2.5
3,501,521	+		BT2817	0.51	-1.3
3,501,616	-		BT2817	0.57	+0.7
3,501,618	+		BT2817	0.57	-1.3
3,501,618	+		BT2817	0.57	-2.1
3,501,619	-		BT2817	0.57	+0.7