Strain Fitness in Bacteroides thetaiotaomicron VPI-5482 around BT1289

Experiment: (+)-Arabinogalactan; autoclaved 2.5 mg/ml (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	(+)-Arabinogalactan; autoclaved 2.5 mg/ml (C)
1,605,111	-		BT1288	0.34	-0.5
1,605,134	+		BT1288	0.36	-1.3
1,605,141	+		BT1288	0.36	-1.5
1,605,235	-		BT1288	0.43	-1.1
1,605,235	-		BT1288	0.43	-2.3
1,605,235	-		BT1288	0.43	-1.1
1,605,339	+		BT1288	0.51	+0.5
1,605,418	-		BT1288	0.57	+1.5
1,605,418	-		BT1288	0.57	+1.1
1,605,525	-		BT1288	0.65	-0.1
1,605,525	-		BT1288	0.65	+0.5
1,605,537	-		BT1288	0.66	-0.2
1,605,544	-		BT1288	0.66	-1.2
1,605,561	+		BT1288	0.67	-1.3
1,605,562	-		BT1288	0.68	+0.5
1,605,609	+		BT1288	0.71	-1.1
1,605,613	-		BT1288	0.71	-0.8
1,605,650	+		BT1288	0.74	-1.5
1,605,651	-		BT1288	0.74	-0.5
1,605,722	+		BT1288	0.79	+0.5
1,605,722	+		BT1288	0.79	+0.7
1,605,723	-		BT1288	0.79	-1.2
1,605,806	+		BT1288	0.86	-2.0
1,605,820	-		BT1288	0.87	-2.2
1,605,879	+				+0.5
1,605,882	-				-1.7
1,605,895	-				-0.3
1,605,896	+				-1.1
1,605,897	-				+0.5
1,605,897	-				-0.3
1,605,936	-				-1.1
1,605,936	-				-2.1
1,606,016	+				-1.1
1,606,017	-				-0.3
1,606,068	+				-0.5
1,606,159	+		BT1289	0.17	-0.9
1,606,159	+		BT1289	0.17	-0.2
1,606,159	+		BT1289	0.17	+0.5
1,606,159	+		BT1289	0.17	-1.1
1,606,160	-		BT1289	0.17	-0.5
1,606,196	+		BT1289	0.22	+0.6
1,606,196	+		BT1289	0.22	-0.5
1,606,304	+		BT1289	0.35	+0.5
1,606,378	-		BT1289	0.44	-1.5
1,606,430	-		BT1289	0.51	+1.8
1,606,459	-		BT1289	0.55	+0.5
1,606,487	+		BT1289	0.58	-4.0
1,606,508	+		BT1289	0.61	+1.5
1,606,509	-		BT1289	0.61	+1.1
1,606,590	-		BT1289	0.71	-1.8
1,606,625	+		BT1289	0.75	+3.3
1,606,739	-		BT1289	0.90	-0.8
1,606,767	+				-0.5
1,606,780	-				-0.5
1,606,816	-				+0.5
1,606,821	-				-1.8
1,606,841	-				-0.3
1,606,927	+		BT1290	0.15	+0.5
1,606,927	+		BT1290	0.15	-2.7
1,606,957	+		BT1290	0.18	-1.1
1,607,014	+		BT1290	0.26	-0.5
1,607,131	-		BT1290	0.41	+0.5
1,607,131	-		BT1290	0.41	-0.5
1,607,131	-		BT1290	0.41	-1.5
1,607,185	+		BT1290	0.48	-1.1
1,607,270	-		BT1290	0.59	-2.8
1,607,273	+		BT1290	0.59	-0.5
1,607,273	+		BT1290	0.59	-1.7
1,607,386	+		BT1290	0.74	-2.3
1,607,387	-		BT1290	0.74	-1.7
1,607,408	-		BT1290	0.76	-3.3
1,607,411	+		BT1290	0.77	-2.1
1,607,428	+		BT1290	0.79	+1.1
1,607,497	+		BT1290	0.88	-1.8
1,607,560	-				+1.5
1,607,594	+				-2.4
1,607,627	+				-1.3
1,607,640	+				-0.3
1,607,670	+				+1.5
1,607,756	+				-1.1
1,607,769	+		BT1291	0.10	-0.5
1,607,770	-		BT1291	0.10	-2.2