Strain Fitness in Bacteroides thetaiotaomicron VPI-5482 around BT3309

Experiment: (+)-Arabinogalactan; autoclaved 5 mg/ml (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	(+)-Arabinogalactan; autoclaved 5 mg/ml (C)
4,245,749	+		BT3308	0.25	-0.9
4,245,750	-		BT3308	0.26	-2.5
4,245,750	-		BT3308	0.26	-1.4
4,245,764	+		BT3308	0.27	+1.7
4,245,826	-		BT3308	0.32	+0.1
4,246,011	+		BT3308	0.47	-1.9
4,246,089	-		BT3308	0.53	-0.7
4,246,105	-		BT3308	0.55	-1.9
4,246,123	+		BT3308	0.56	+1.7
4,246,124	-		BT3308	0.56	-1.7
4,246,182	+		BT3308	0.61	+1.2
4,246,183	-		BT3308	0.61	-1.2
4,246,287	+		BT3308	0.70	+0.4
4,246,288	-		BT3308	0.70	-1.6
4,246,290	-		BT3308	0.70	+0.1
4,246,295	-		BT3308	0.70	-1.2
4,246,314	+		BT3308	0.72	+0.1
4,246,338	-		BT3308	0.74	-2.0
4,246,338	-		BT3308	0.74	-1.7
4,246,500	-		BT3308	0.87	+0.1
4,246,507	+		BT3308	0.88	-2.9
4,246,508	-		BT3308	0.88	-0.9
4,246,511	+		BT3308	0.88	-2.7
4,246,533	+		BT3308	0.90	-0.6
4,246,533	+		BT3308	0.90	-1.2
4,246,539	-				-0.9
4,246,542	+				+0.9
4,246,572	-				-1.5
4,246,660	-				+0.1
4,246,681	-				-0.5
4,246,687	+				+0.1
4,246,698	-				-1.5
4,246,701	-				-0.3
4,246,701	-				+0.1
4,246,827	+				-0.5
4,246,828	-				-0.7
4,246,905	+		BT3309	0.12	-1.5
4,246,926	+		BT3309	0.13	-0.3
4,246,936	-		BT3309	0.14	-0.6
4,246,946	+		BT3309	0.15	+0.1
4,246,965	+		BT3309	0.16	+1.1
4,246,998	-		BT3309	0.18	-1.4
4,247,023	+		BT3309	0.19	-1.6
4,247,067	-		BT3309	0.22	+1.3
4,247,070	+		BT3309	0.22	-2.5
4,247,071	-		BT3309	0.22	-0.6
4,247,131	+		BT3309	0.26	-0.4
4,247,132	-		BT3309	0.26	-0.9
4,247,139	+		BT3309	0.26	+0.6
4,247,144	+		BT3309	0.27	+0.1
4,247,145	-		BT3309	0.27	-1.3
4,247,163	+		BT3309	0.28	-0.9
4,247,164	-		BT3309	0.28	+0.1
4,247,200	+		BT3309	0.30	-0.1
4,247,200	+		BT3309	0.30	-0.6
4,247,201	-		BT3309	0.30	+0.7
4,247,232	+		BT3309	0.32	-0.9
4,247,233	-		BT3309	0.32	-0.9
4,247,234	+		BT3309	0.32	-2.1
4,247,246	-		BT3309	0.33	-0.9
4,247,247	+		BT3309	0.33	-0.9
4,247,248	-		BT3309	0.33	+0.1
4,247,257	+		BT3309	0.33	+1.1
4,247,257	+		BT3309	0.33	+0.5
4,247,393	-		BT3309	0.42	-1.4
4,247,417	+		BT3309	0.43	-0.9
4,247,418	-				-1.9
4,247,433	-		BT3309	0.44	-1.5
4,247,438	-		BT3309	0.44	-0.9
4,247,560	-		BT3309	0.52	-1.5
4,247,565	+		BT3309	0.52	+2.4
4,247,565	+		BT3309	0.52	-1.8
4,247,566	-		BT3309	0.52	-1.5
4,247,567	+		BT3309	0.52	-1.2
4,247,568	-		BT3309	0.52	-0.5
4,247,588	+		BT3309	0.54	-2.4
4,247,598	+		BT3309	0.54	+1.1
4,247,658	+		BT3309	0.58	-0.8
4,247,704	+		BT3309	0.61	-0.9
4,247,705	-		BT3309	0.61	+0.7
4,247,753	+		BT3309	0.64	-0.6
4,247,753	+		BT3309	0.64	-2.2
4,247,840	-		BT3309	0.69	+0.1
4,247,891	+		BT3309	0.72	-0.6
4,247,900	+		BT3309	0.73	-2.5
4,247,910	+		BT3309	0.73	-0.9
4,247,913	-		BT3309	0.73	+0.4
4,247,939	+		BT3309	0.75	-2.2
4,247,939	+		BT3309	0.75	-0.2
4,247,964	+		BT3309	0.76	-1.7
4,247,965	-		BT3309	0.77	-1.8
4,247,978	-		BT3309	0.77	-1.5
4,247,989	+		BT3309	0.78	-1.2
4,248,014	-		BT3309	0.80	-2.2
4,248,017	+		BT3309	0.80	-0.9
4,248,065	-		BT3309	0.83	-1.9
4,248,097	+		BT3309	0.85	-1.2
4,248,173	-		BT3309	0.89	-0.5
4,248,220	+				-1.2
4,248,263	+				-1.5
4,248,263	+				-2.9
4,248,276	+				-2.1
4,248,360	+				-0.7
4,248,396	+				-0.6
4,248,429	+				+0.1
4,248,445	+				+1.1
4,248,502	+				-1.9
4,248,503	-				-3.3
4,248,528	+				-1.9
4,248,528	+				-1.8
4,248,528	+				+0.1
4,248,533	+				-0.5
4,248,534	-				-1.5
4,248,618	+				-1.5
4,248,708	+				+0.1
4,248,708	+				-0.5
4,248,709	-				-2.2
4,248,709	-				+0.1
4,248,714	+				-0.9
4,248,733	+				-1.3
4,248,733	+				+1.7
4,248,761	+				-2.4
4,248,795	+				-1.5
4,248,798	+				+0.1
4,248,806	+				-1.0
4,248,810	+				-2.2
4,248,817	+				-2.2
4,248,818	-				-1.6
4,248,818	-				+0.2
4,248,818	-				-0.9
4,248,892	-		BT3310	0.11	-1.8
4,248,923	-		BT3310	0.12	-1.9
4,248,958	+		BT3310	0.13	+1.1
4,248,973	-		BT3310	0.14	+0.1
4,249,113	+		BT3310	0.18	+0.1
4,249,114	-		BT3310	0.18	+1.1
4,249,116	-		BT3310	0.18	-1.5
4,249,116	-		BT3310	0.18	-1.2
4,249,120	-		BT3310	0.19	-1.5
4,249,211	-		BT3310	0.22	-1.2
4,249,215	-		BT3310	0.22	-1.5
4,249,215	-		BT3310	0.22	-2.0