Strain Fitness in Bacteroides thetaiotaomicron VPI-5482 around BT3179

Experiment: (+)-Arabinogalactan; autoclaved 5 mg/ml (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	(+)-Arabinogalactan; autoclaved 5 mg/ml (C)
4,064,587	-		BT3178	0.59	-1.3
4,064,587	-		BT3178	0.59	-0.9
4,064,598	+		BT3178	0.59	-2.4
4,064,603	-		BT3178	0.60	-1.0
4,064,603	-		BT3178	0.60	-1.3
4,064,608	+		BT3178	0.60	-1.0
4,064,718	-		BT3178	0.64	-1.3
4,064,751	-		BT3178	0.66	+0.0
4,064,810	-		BT3178	0.68	-1.5
4,064,860	-		BT3178	0.71	-2.5
4,064,860	-		BT3178	0.71	-1.4
4,064,936	+		BT3178	0.74	-2.1
4,064,937	-		BT3178	0.74	+0.0
4,064,942	-		BT3178	0.74	+0.0
4,064,943	+		BT3178	0.74	-2.5
4,064,944	-		BT3178	0.74	+0.0
4,064,944	-		BT3178	0.74	-2.8
4,064,944	-		BT3178	0.74	-1.0
4,064,964	+		BT3178	0.75	-2.0
4,064,971	-		BT3178	0.75	-3.4
4,064,971	-		BT3178	0.75	-1.4
4,064,971	-		BT3178	0.75	-2.3
4,064,971	-		BT3178	0.75	-1.0
4,064,971	-		BT3178	0.75	-2.3
4,064,971	-		BT3178	0.75	-0.2
4,064,984	-		BT3178	0.76	-2.2
4,065,003	-		BT3178	0.77	-1.8
4,065,167	-		BT3178	0.84	-2.3
4,065,198	+		BT3178	0.85	-3.4
4,065,221	+		BT3178	0.86	-1.8
4,065,221	+		BT3178	0.86	-1.0
4,065,222	-		BT3178	0.86	+0.0
4,065,222	-		BT3178	0.86	+0.6
4,065,226	-		BT3178	0.86	-1.0
4,065,226	-		BT3178	0.86	-1.0
4,065,290	+		BT3178	0.89	-2.4
4,065,290	+		BT3178	0.89	-1.8
4,065,290	+		BT3178	0.89	+0.0
4,065,291	-		BT3178	0.89	-1.7
4,065,291	-		BT3178	0.89	-1.0
4,065,295	-		BT3178	0.89	-2.0
4,065,346	-				-2.5
4,065,393	+				-1.8
4,065,411	-				-1.5
4,065,411	-				-1.2
4,065,445	-				-1.1
4,065,446	+				-1.0
4,065,536	+				+1.0
4,065,537	-				-0.8
4,065,537	-				-2.3
4,065,577	+				-1.0
4,065,577	+				-0.5
4,065,684	+				-3.1
4,065,684	+				+7.0
4,065,684	+				-0.2
4,065,684	+				+0.0
4,065,684	+				-0.7
4,065,684	+				-0.3
4,065,685	-				-2.0
4,065,685	-				-0.7
4,065,685	-				-1.0
4,065,685	-				-1.5
4,065,688	+				-1.0
4,065,688	+				-1.5
4,065,688	+				-1.0
4,065,688	+				-0.6
4,065,689	-				-1.3
4,065,689	-				-2.0
4,065,689	-				-1.8
4,065,697	-				-2.0
4,065,697	-				-1.4
4,065,744	+				-0.5
4,065,744	+				-3.1
4,065,747	+				-1.8
4,065,750	-				-3.0
4,065,750	-				+0.3
4,065,817	-				-1.7
4,065,831	+				+0.0
4,065,832	-				+0.0
4,065,833	+				-0.3
4,065,834	-				+2.0
4,065,834	-				-2.1
4,065,853	+		BT3179	0.10	-3.0
4,065,854	-		BT3179	0.10	+1.0
4,065,854	-		BT3179	0.10	-1.5
4,065,885	+		BT3179	0.11	-1.0
4,065,891	-		BT3179	0.11	-1.0
4,065,901	-		BT3179	0.12	-1.3
4,065,929	+		BT3179	0.13	-1.0
4,065,939	-		BT3179	0.13	-2.0
4,065,970	-		BT3179	0.14	-1.0
4,066,071	+		BT3179	0.17	-2.3
4,066,072	-		BT3179	0.17	-1.0
4,066,078	+		BT3179	0.17	-1.5
4,066,079	-		BT3179	0.18	-0.2
4,066,186	+		BT3179	0.21	+0.6
4,066,187	-		BT3179	0.21	-1.4
4,066,187	-		BT3179	0.21	-2.0
4,066,189	-		BT3179	0.21	-2.0
4,066,210	-		BT3179	0.22	-0.5
4,066,210	-		BT3179	0.22	-0.7
4,066,210	-		BT3179	0.22	-2.1
4,066,261	-		BT3179	0.23	+0.0
4,066,286	+		BT3179	0.24	-1.9
4,066,286	+		BT3179	0.24	-1.7
4,066,287	-		BT3179	0.24	+0.6
4,066,297	-		BT3179	0.25	-2.0
4,066,540	-		BT3179	0.33	-2.3
4,066,541	+		BT3179	0.33	+0.0
4,066,624	+		BT3179	0.35	+0.0
4,066,644	-		BT3179	0.36	+0.0
4,066,661	-		BT3179	0.36	-0.7
4,066,712	-		BT3179	0.38	-1.2
4,066,757	+		BT3179	0.40	-1.8
4,066,757	+		BT3179	0.40	+0.0
4,066,758	-		BT3179	0.40	-2.0
4,066,758	-		BT3179	0.40	-1.0
4,066,758	-		BT3179	0.40	-0.5
4,066,766	+		BT3179	0.40	-1.0
4,066,767	-		BT3179	0.40	-1.5
4,066,767	-		BT3179	0.40	-2.4
4,066,801	-		BT3179	0.41	-1.0
4,066,850	+		BT3179	0.43	-2.3
4,066,851	-		BT3179	0.43	-1.0
4,066,854	-		BT3179	0.43	+0.0
4,066,875	+		BT3179	0.43	-0.4
4,066,925	-		BT3179	0.45	-1.5
4,066,940	+		BT3179	0.46	+0.0
4,066,941	-		BT3179	0.46	-1.1
4,066,944	+		BT3179	0.46	+0.0
4,066,945	-				-1.0
4,066,945	-		BT3179	0.46	+0.0
4,067,025	-		BT3179	0.48	-1.0
4,067,029	-		BT3179	0.48	-1.6
4,067,071	-		BT3179	0.50	-1.6
4,067,097	-		BT3179	0.51	-1.2
4,067,106	+		BT3179	0.51	-0.8
4,067,107	-		BT3179	0.51	-0.8
4,067,107	-		BT3179	0.51	-1.5
4,067,107	-		BT3179	0.51	-1.2
4,067,107	-		BT3179	0.51	-0.3
4,067,146	-		BT3179	0.52	-1.3
4,067,162	+		BT3179	0.53	-2.3
4,067,210	+		BT3179	0.54	-0.7
4,067,211	-		BT3179	0.54	-1.5
4,067,311	+		BT3179	0.58	-2.3
4,067,325	-		BT3179	0.58	-1.5
4,067,404	+		BT3179	0.61	-0.7
4,067,405	-		BT3179	0.61	-1.0
4,067,444	-		BT3179	0.62	-1.5
4,067,444	-		BT3179	0.62	-1.5
4,067,465	-		BT3179	0.63	+1.6
4,067,465	-		BT3179	0.63	-0.4
4,067,542	-		BT3179	0.65	-0.4
4,067,543	+		BT3179	0.65	-2.1
4,067,680	-		BT3179	0.70	-1.0
4,067,745	+		BT3179	0.72	-1.6
4,067,894	+		BT3179	0.77	-0.7
4,067,894	+		BT3179	0.77	+0.0
4,067,896	+		BT3179	0.77	+0.0
4,067,897	-		BT3179	0.77	-1.5
4,067,897	-		BT3179	0.77	-2.2
4,067,897	-		BT3179	0.77	-0.5
4,067,897	-		BT3179	0.77	-1.1
4,067,928	-		BT3179	0.78	-1.5
4,067,975	+		BT3179	0.79	-1.0
4,068,011	+		BT3179	0.80	-2.7
4,068,035	-		BT3179	0.81	-1.7
4,068,035	-		BT3179	0.81	+0.0
4,068,038	+		BT3179	0.81	-1.3
4,068,038	+		BT3179	0.81	-1.5
4,068,039	-		BT3179	0.81	-1.6
4,068,064	+		BT3179	0.82	-1.0
4,068,084	+		BT3179	0.83	-2.3
4,068,087	-		BT3179	0.83	-1.5
4,068,122	+		BT3179	0.84	-0.7
4,068,123	-		BT3179	0.84	-1.5
4,068,158	-		BT3179	0.85	-0.9
4,068,191	+		BT3179	0.86	-1.6
4,068,192	-		BT3179	0.86	-2.3
4,068,195	+		BT3179	0.86	+0.1
4,068,195	+		BT3179	0.86	+0.1
4,068,237	+		BT3179	0.88	-1.6
4,068,238	-		BT3179	0.88	-1.5
4,068,238	-		BT3179	0.88	+0.2
4,068,265	+		BT3179	0.89	-0.9
4,068,269	+		BT3179	0.89	-0.4
4,068,270	-		BT3179	0.89	+0.1
4,068,273	+		BT3179	0.89	-1.4
4,068,274	-		BT3179	0.89	-0.9
4,068,274	-		BT3179	0.89	-1.9
4,068,274	-		BT3179	0.89	+0.8
4,068,275	+		BT3179	0.89	-2.3
4,068,306	+		BT3179	0.90	-1.5
4,068,307	-				-1.3
4,068,307	-				-1.3
4,068,344	-				-0.8
4,068,389	-				-0.9
4,068,458	+				-0.5
4,068,477	-				-1.0
4,068,477	-				+0.1
4,068,489	-				+0.6
4,068,493	+				-0.9
4,068,521	-				-0.6
4,068,521	-				+0.1
4,068,531	-				-0.9
4,068,660	-				-0.9
4,068,758	+				-2.3
4,068,842	+		BT3180	0.17	-2.5
4,068,901	+		BT3180	0.22	-2.3
4,068,909	+		BT3180	0.23	-2.6
4,069,020	+		BT3180	0.33	-0.7
4,069,024	+		BT3180	0.33	-1.2
4,069,025	-		BT3180	0.33	+0.1
4,069,025	-		BT3180	0.33	-0.5
4,069,051	-		BT3180	0.36	-1.2
4,069,125	-		BT3180	0.42	-0.4
4,069,139	+		BT3180	0.43	+0.1
4,069,139	+		BT3180	0.43	+1.1
4,069,141	+		BT3180	0.44	-2.3
4,069,141	+		BT3180	0.44	-1.1
4,069,142	-		BT3180	0.44	-1.0
4,069,218	-		BT3180	0.50	+0.1
4,069,218	-		BT3180	0.50	-1.2
4,069,277	-		BT3180	0.56	-1.5
4,069,279	+		BT3180	0.56	-3.3
4,069,280	-		BT3180	0.56	-1.9
4,069,285	+		BT3180	0.56	-1.0
4,069,286	-		BT3180	0.56	-0.4
4,069,286	-		BT3180	0.56	-3.1
4,069,296	-		BT3180	0.57	-1.5
4,069,490	+		BT3180	0.74	-2.2
4,069,491	-		BT3180	0.74	-0.3
4,069,491	-		BT3180	0.74	-1.5
4,069,491	-		BT3180	0.74	-2.2
4,069,491	-		BT3180	0.74	-0.1
4,069,494	-		BT3180	0.75	-2.8
4,069,505	-		BT3180	0.76	-1.5
4,069,526	+		BT3180	0.78	-2.5
4,069,527	-		BT3180	0.78	+0.5
4,069,590	+		BT3180	0.83	+1.1
4,069,591	-		BT3180	0.83	-1.5
4,069,609	+		BT3180	0.85	-0.1