Strain Fitness in Bacteroides thetaiotaomicron VPI-5482 around BT2506

Experiment: (+)-Arabinogalactan; autoclaved 5 mg/ml (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	(+)-Arabinogalactan; autoclaved 5 mg/ml (C)
3,130,276	+		BT2505	0.84	+0.6
3,130,282	-		BT2505	0.85	-1.6
3,130,295	-		BT2505	0.87	+0.8
3,130,366	+				-2.1
3,130,408	-				-1.0
3,130,421	+				+0.0
3,130,421	+				+0.0
3,130,429	-				-1.3
3,130,694	+				-1.0
3,130,709	+				+0.0
3,130,710	-				-1.3
3,130,721	+				-1.0
3,130,762	-				-0.7
3,130,787	-				+0.0
3,130,787	-				-1.9
3,130,799	+				-2.8
3,130,801	+				+0.6
3,130,806	+				-0.7
3,130,807	-				-1.5
3,130,856	+				-1.6
3,130,884	-				+3.0
3,130,884	-				-1.6
3,130,887	+				-1.0
3,130,895	+				-1.2
3,130,897	+				-0.7
3,130,898	-				+0.0
3,130,898	-				-1.7
3,130,898	-				-1.4
3,130,902	+				-1.6
3,130,918	-				+0.0
3,130,982	+				-1.0
3,130,982	+				-1.6
3,130,983	-				-0.7
3,130,984	-				-1.6
3,130,990	-				-0.6
3,131,011	+				+0.4
3,131,084	+				-0.7
3,131,116	-				+0.0
3,131,123	-				-1.3
3,131,196	-				-1.4
3,131,196	-				+0.0
3,131,254	+				-1.7
3,131,276	+				-1.6
3,131,307	+				-1.5
3,131,308	-				-1.5
3,131,308	-				+0.0
3,131,310	-				-1.9
3,131,333	+		BT2506	0.13	+0.4
3,131,333	+		BT2506	0.13	+0.0
3,131,334	-		BT2506	0.14	-1.0
3,131,340	-		BT2506	0.15	+2.6
3,131,345	+		BT2506	0.16	+0.0
3,131,346	-		BT2506	0.16	-1.4
3,131,382	-		BT2506	0.23	-2.0
3,131,411	+		BT2506	0.29	-1.6
3,131,411	+		BT2506	0.29	-0.6
3,131,414	+		BT2506	0.29	-2.0
3,131,415	-		BT2506	0.29	-1.0
3,131,416	-		BT2506	0.29	+0.0
3,131,431	-		BT2506	0.32	-2.1
3,131,447	+		BT2506	0.35	+1.0
3,131,447	+		BT2506	0.35	+1.6
3,131,447	+		BT2506	0.35	-2.0
3,131,475	-		BT2506	0.41	-1.4
3,131,492	+		BT2506	0.44	-0.6
3,131,495	+		BT2506	0.45	-1.7
3,131,538	-		BT2506	0.53	+0.0
3,131,574	-		BT2506	0.60	-1.4
3,131,574	-		BT2506	0.60	-2.3
3,131,578	-		BT2506	0.61	-1.2
3,131,587	-		BT2506	0.62	-3.0
3,131,592	-		BT2506	0.63	-2.3
3,131,601	+		BT2506	0.65	-0.8
3,131,603	+		BT2506	0.66	-0.8
3,131,603	+		BT2506	0.66	-2.6
3,131,603	+		BT2506	0.66	-1.5
3,131,604	-		BT2506	0.66	-0.6
3,131,614	+		BT2506	0.68	-0.6
3,131,615	-		BT2506	0.68	+0.0
3,131,658	-		BT2506	0.76	-1.6
3,131,660	-		BT2506	0.76	-0.8
3,131,660	-		BT2506	0.76	-0.8
3,131,664	+		BT2506	0.77	-1.8
3,131,681	+		BT2506	0.81	-1.0
3,131,700	-		BT2506	0.84	-0.6
3,131,702	-		BT2506	0.85	-2.0
3,131,703	+		BT2506	0.85	-1.0
3,131,703	+		BT2506	0.85	+0.0
3,131,704	-		BT2506	0.85	-1.0
3,131,704	-		BT2506	0.85	-2.0
3,131,704	-		BT2506	0.85	+2.6
3,131,751	-				-1.1
3,131,763	+				-1.8
3,131,769	-				-0.3
3,131,772	-				-1.0
3,131,872	+		BT2507	0.12	+0.0
3,131,873	-		BT2507	0.12	-1.0
3,131,873	-		BT2507	0.12	-1.0
3,131,930	-		BT2507	0.20	-1.7
3,131,966	-		BT2507	0.25	-1.8
3,131,968	-		BT2507	0.26	-1.0
3,131,968	-		BT2507	0.26	+1.0
3,131,975	-		BT2507	0.27	-4.1
3,131,986	+		BT2507	0.28	+1.6
3,131,998	-		BT2507	0.30	-1.0
3,132,000	-		BT2507	0.30	-1.2
3,132,009	+		BT2507	0.31	+1.0
3,132,009	+		BT2507	0.31	+1.0
3,132,010	-		BT2507	0.32	-2.3
3,132,010	-		BT2507	0.32	+0.0
3,132,047	-		BT2507	0.37	+0.0
3,132,048	+		BT2507	0.37	+0.0
3,132,048	+		BT2507	0.37	-0.5
3,132,078	+		BT2507	0.41	-2.0
3,132,079	-		BT2507	0.41	-1.0
3,132,113	+		BT2507	0.46	-1.0
3,132,113	+		BT2507	0.46	-1.8
3,132,119	-		BT2507	0.47	-1.2
3,132,182	+		BT2507	0.56	+1.6
3,132,185	-		BT2507	0.56	+2.4
3,132,222	+		BT2507	0.61	-1.7
3,132,223	-		BT2507	0.61	-1.0
3,132,225	+		BT2507	0.62	-2.1
3,132,225	+		BT2507	0.62	-1.3
3,132,225	+		BT2507	0.62	-1.0
3,132,226	-		BT2507	0.62	-1.4
3,132,226	-		BT2507	0.62	-2.3
3,132,226	-		BT2507	0.62	-0.2
3,132,308	-		BT2507	0.73	-1.3
3,132,322	-		BT2507	0.75	-0.6
3,132,350	-		BT2507	0.79	-1.0
3,132,364	+		BT2507	0.81	-1.8
3,132,386	-		BT2507	0.84	-2.0
3,132,386	-		BT2507	0.84	-2.6
3,132,394	+		BT2507	0.86	-3.0
3,132,397	-		BT2507	0.86	+0.0
3,132,474	+				+0.6
3,132,508	-				+1.0
3,132,520	+				-1.3
3,132,520	+				-2.6
3,132,581	-		BT2508	0.17	-1.0
3,132,634	-		BT2508	0.26	+0.2
3,132,635	+		BT2508	0.26	-1.5
3,132,655	-		BT2508	0.29	+0.0
3,132,655	-		BT2508	0.29	+0.0
3,132,657	-		BT2508	0.29	-0.9
3,132,657	-		BT2508	0.29	-3.1
3,132,678	+		BT2508	0.33	-2.3
3,132,678	+		BT2508	0.33	-1.5
3,132,679	-		BT2508	0.33	-1.7
3,132,680	+		BT2508	0.33	-1.2
3,132,756	+		BT2508	0.46	-0.9
3,132,759	+		BT2508	0.46	-0.9
3,132,778	+		BT2508	0.49	-0.3
3,132,779	-		BT2508	0.49	-2.1