Experiment: (+)-Arabinogalactan; autoclaved 5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BT0500 and BT0501 are separated by 99 nucleotides BT0501 and BT0502 are separated by 89 nucleotides BT0502 and BT0503 are separated by 121 nucleotides BT0503 and BT0504 are separated by 96 nucleotides
BT0500: BT0500 - putative transport protein (NCBI ptt file), at 618,425 to 620,023
BT0500
BT0501: BT0501 - hypothetical protein (NCBI ptt file), at 620,123 to 620,455
BT0501
BT0502: BT0502 - TonB-dependent outer membrane receptor (NCBI ptt file), at 620,545 to 622,872
BT0502
BT0503: BT0503 - hypothetical protein (NCBI ptt file), at 622,994 to 623,335
BT0503
BT0504: BT0504 - TonB-dependent outer membrane receptor (NCBI ptt file), at 623,432 to 625,771
BT0504
Position (kb) 620
621
622
623 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 619.593 kb on + strand, within BT0500 at 619.651 kb on + strand, within BT0500 at 619.765 kb on - strand, within BT0500 at 619.797 kb on + strand, within BT0500 at 619.798 kb on - strand, within BT0500 at 619.930 kb on + strand at 619.989 kb on + strand at 620.019 kb on - strand at 620.039 kb on - strand at 620.039 kb on - strand at 620.045 kb on - strand at 620.070 kb on - strand at 620.167 kb on + strand, within BT0501 at 620.168 kb on - strand, within BT0501 at 620.381 kb on - strand, within BT0501 at 620.390 kb on + strand, within BT0501 at 620.390 kb on + strand, within BT0501 at 620.465 kb on - strand at 620.555 kb on - strand at 620.685 kb on + strand at 620.712 kb on + strand at 620.712 kb on + strand at 620.823 kb on - strand, within BT0502 at 620.849 kb on + strand, within BT0502 at 620.868 kb on + strand, within BT0502 at 620.982 kb on - strand, within BT0502 at 621.054 kb on - strand, within BT0502 at 621.100 kb on - strand, within BT0502 at 621.100 kb on - strand, within BT0502 at 621.282 kb on + strand, within BT0502 at 621.283 kb on - strand, within BT0502 at 621.285 kb on + strand, within BT0502 at 621.286 kb on - strand, within BT0502 at 621.416 kb on - strand, within BT0502 at 621.448 kb on + strand, within BT0502 at 621.531 kb on + strand, within BT0502 at 621.743 kb on - strand, within BT0502 at 621.746 kb on - strand, within BT0502 at 621.814 kb on + strand, within BT0502 at 621.815 kb on - strand, within BT0502 at 621.815 kb on - strand, within BT0502 at 621.820 kb on + strand, within BT0502 at 621.900 kb on + strand, within BT0502 at 621.900 kb on + strand, within BT0502 at 621.901 kb on - strand, within BT0502 at 621.901 kb on - strand, within BT0502 at 622.018 kb on - strand, within BT0502 at 622.036 kb on - strand, within BT0502 at 622.100 kb on - strand, within BT0502 at 622.221 kb on - strand, within BT0502 at 622.237 kb on - strand, within BT0502 at 622.237 kb on - strand, within BT0502 at 622.240 kb on + strand, within BT0502 at 622.354 kb on - strand, within BT0502 at 622.360 kb on + strand, within BT0502 at 622.362 kb on + strand, within BT0502 at 622.555 kb on + strand, within BT0502 at 622.556 kb on - strand, within BT0502 at 622.597 kb on + strand, within BT0502 at 622.597 kb on + strand, within BT0502 at 622.597 kb on + strand, within BT0502 at 622.962 kb on - strand at 623.143 kb on + strand, within BT0503 at 623.143 kb on + strand, within BT0503 at 623.143 kb on + strand, within BT0503 at 623.179 kb on - strand, within BT0503 at 623.188 kb on + strand, within BT0503 at 623.397 kb on + strand at 623.397 kb on + strand at 623.463 kb on + strand at 623.464 kb on - strand at 623.579 kb on + strand at 623.585 kb on - strand at 623.610 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction (+)-Arabinogalactan; autoclaved 5 mg/ml (C) remove 619,593 + BT0500 0.73 -0.1 619,651 + BT0500 0.77 -1.1 619,765 - BT0500 0.84 -0.3 619,797 + BT0500 0.86 -1.1 619,798 - BT0500 0.86 -1.1 619,930 + +0.7 619,989 + -0.1 620,019 - +0.9 620,039 - -0.1 620,039 - -1.1 620,045 - -0.1 620,070 - +0.9 620,167 + BT0501 0.13 -1.1 620,168 - BT0501 0.14 -1.1 620,381 - BT0501 0.77 -2.9 620,390 + BT0501 0.80 -0.7 620,390 + BT0501 0.80 -1.7 620,465 - -2.1 620,555 - -1.2 620,685 + -1.1 620,712 + -2.1 620,712 + -2.1 620,823 - BT0502 0.12 -0.1 620,849 + BT0502 0.13 -0.1 620,868 + BT0502 0.14 -1.7 620,982 - BT0502 0.19 -1.1 621,054 - BT0502 0.22 -1.1 621,100 - BT0502 0.24 -1.1 621,100 - BT0502 0.24 -0.1 621,282 + BT0502 0.32 -0.6 621,283 - BT0502 0.32 -2.1 621,285 + BT0502 0.32 -1.1 621,286 - BT0502 0.32 -0.3 621,416 - BT0502 0.37 +0.9 621,448 + BT0502 0.39 +0.4 621,531 + BT0502 0.42 -1.1 621,743 - BT0502 0.51 -1.6 621,746 - BT0502 0.52 +0.9 621,814 + BT0502 0.55 -1.6 621,815 - BT0502 0.55 -0.1 621,815 - BT0502 0.55 -0.1 621,820 + BT0502 0.55 -0.6 621,900 + BT0502 0.58 -0.6 621,900 + BT0502 0.58 +0.9 621,901 - BT0502 0.58 -0.6 621,901 - BT0502 0.58 +0.5 622,018 - BT0502 0.63 +1.5 622,036 - BT0502 0.64 -1.6 622,100 - BT0502 0.67 -0.4 622,221 - BT0502 0.72 -1.1 622,237 - BT0502 0.73 +0.5 622,237 - BT0502 0.73 -0.1 622,240 + BT0502 0.73 -0.6 622,354 - BT0502 0.78 -0.1 622,360 + BT0502 0.78 -1.6 622,362 + BT0502 0.78 -0.1 622,555 + BT0502 0.86 -2.1 622,556 - BT0502 0.86 +0.4 622,597 + BT0502 0.88 +0.4 622,597 + BT0502 0.88 -0.1 622,597 + BT0502 0.88 -1.1 622,962 - -0.1 623,143 + BT0503 0.44 -1.1 623,143 + BT0503 0.44 -1.6 623,143 + BT0503 0.44 -2.2 623,179 - BT0503 0.54 -0.8 623,188 + BT0503 0.57 -0.1 623,397 + -1.1 623,397 + -1.1 623,463 + -2.1 623,464 - -1.1 623,579 + -1.2 623,585 - -0.5 623,610 + -0.6
Or see this region's nucleotide sequence