Experiment: (+)-Arabinogalactan; autoclaved 5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BT0285 and BT0286 overlap by 17 nucleotides BT0286 and BT0287 are separated by 4 nucleotides BT0287 and BT0288 overlap by 26 nucleotides BT0288 and BT0289 are separated by 257 nucleotides
BT0285: BT0285 - putative tolQ-type transport protein (NCBI ptt file), at 330,174 to 331,592
BT0285
BT0286: BT0286 - hypothetical protein (NCBI ptt file), at 331,576 to 332,022
BT0286
BT0287: BT0287 - putative biopolymer transmembrane protein (NCBI ptt file), at 332,027 to 332,452
BT0287
BT0288: BT0288 - conserved hypothetical protein (NCBI ptt file), at 332,427 to 333,950
BT0288
BT0289: BT0289 - conserved hypothetical protein (NCBI ptt file), at 334,208 to 336,898
BT0289
Position (kb) 332
333
334 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 331.508 kb on - strand at 331.511 kb on + strand at 331.514 kb on + strand at 331.515 kb on - strand at 331.515 kb on - strand at 331.515 kb on - strand at 331.545 kb on - strand at 331.607 kb on + strand at 331.632 kb on - strand, within BT0286 at 331.674 kb on + strand, within BT0286 at 331.675 kb on - strand, within BT0286 at 331.770 kb on - strand, within BT0286 at 331.820 kb on - strand, within BT0286 at 331.906 kb on - strand, within BT0286 at 331.906 kb on - strand, within BT0286 at 331.950 kb on - strand, within BT0286 at 331.984 kb on + strand at 331.990 kb on - strand at 332.027 kb on - strand at 332.045 kb on - strand at 332.045 kb on - strand at 332.221 kb on - strand, within BT0287 at 332.246 kb on + strand at 332.306 kb on - strand, within BT0287 at 332.339 kb on - strand, within BT0287 at 332.344 kb on + strand, within BT0287 at 332.410 kb on + strand at 332.412 kb on + strand at 332.427 kb on - strand at 332.549 kb on + strand at 332.877 kb on + strand, within BT0288 at 332.877 kb on + strand, within BT0288 at 332.877 kb on + strand, within BT0288 at 332.878 kb on - strand, within BT0288 at 332.940 kb on - strand, within BT0288 at 332.980 kb on - strand, within BT0288 at 333.346 kb on - strand, within BT0288 at 333.437 kb on - strand, within BT0288 at 333.439 kb on - strand, within BT0288 at 333.440 kb on + strand, within BT0288 at 333.440 kb on + strand, within BT0288 at 333.443 kb on + strand, within BT0288 at 333.453 kb on + strand, within BT0288 at 333.454 kb on - strand, within BT0288 at 333.456 kb on - strand, within BT0288 at 333.456 kb on - strand, within BT0288 at 333.460 kb on + strand, within BT0288 at 333.460 kb on + strand, within BT0288 at 333.461 kb on - strand, within BT0288 at 333.517 kb on + strand, within BT0288 at 333.517 kb on + strand, within BT0288 at 333.517 kb on + strand, within BT0288 at 333.518 kb on - strand, within BT0288 at 333.540 kb on + strand, within BT0288 at 333.540 kb on + strand, within BT0288 at 333.540 kb on + strand, within BT0288 at 333.542 kb on + strand, within BT0288 at 333.557 kb on - strand, within BT0288 at 333.560 kb on + strand, within BT0288 at 333.665 kb on + strand, within BT0288 at 333.700 kb on - strand, within BT0288 at 333.735 kb on - strand, within BT0288 at 333.768 kb on - strand, within BT0288 at 333.768 kb on - strand, within BT0288 at 333.784 kb on + strand, within BT0288 at 333.800 kb on - strand at 333.810 kb on + strand at 333.816 kb on - strand at 333.826 kb on - strand at 333.827 kb on + strand at 333.879 kb on - strand at 333.931 kb on + strand at 333.949 kb on - strand at 333.972 kb on + strand at 333.986 kb on + strand at 334.136 kb on - strand at 334.136 kb on - strand at 334.136 kb on - strand at 334.136 kb on - strand at 334.249 kb on + strand at 334.268 kb on - strand at 334.268 kb on - strand at 334.362 kb on - strand at 334.364 kb on - strand at 334.364 kb on - strand at 334.369 kb on - strand at 334.369 kb on - strand at 334.369 kb on - strand at 334.371 kb on - strand at 334.371 kb on - strand at 334.517 kb on + strand, within BT0289 at 334.546 kb on + strand, within BT0289 at 334.688 kb on - strand, within BT0289 at 334.697 kb on - strand, within BT0289 at 334.891 kb on + strand, within BT0289 at 334.904 kb on - strand, within BT0289
Per-strain Table
Position Strand Gene LocusTag Fraction (+)-Arabinogalactan; autoclaved 5 mg/ml (C) remove 331,508 - -1.1 331,511 + -1.1 331,514 + -1.1 331,515 - -3.1 331,515 - -1.1 331,515 - -1.7 331,545 - -2.1 331,607 + -1.1 331,632 - BT0286 0.13 -2.9 331,674 + BT0286 0.22 -0.1 331,675 - BT0286 0.22 -1.9 331,770 - BT0286 0.43 -2.4 331,820 - BT0286 0.55 -1.1 331,906 - BT0286 0.74 -2.4 331,906 - BT0286 0.74 -1.1 331,950 - BT0286 0.84 -1.1 331,984 + -1.7 331,990 - -2.4 332,027 - -2.1 332,045 - +2.5 332,045 - -1.7 332,221 - BT0287 0.46 -1.1 332,246 + -0.1 332,306 - BT0287 0.65 -2.1 332,339 - BT0287 0.73 -1.7 332,344 + BT0287 0.74 -2.4 332,410 + -1.1 332,412 + -0.1 332,427 - -0.1 332,549 + -1.1 332,877 + BT0288 0.30 -4.7 332,877 + BT0288 0.30 -1.7 332,877 + BT0288 0.30 -3.5 332,878 - BT0288 0.30 -0.1 332,940 - BT0288 0.34 -1.1 332,980 - BT0288 0.36 -2.1 333,346 - BT0288 0.60 -1.7 333,437 - BT0288 0.66 -0.1 333,439 - BT0288 0.66 -2.2 333,440 + BT0288 0.66 -1.1 333,440 + BT0288 0.66 -2.1 333,443 + BT0288 0.67 -2.1 333,453 + BT0288 0.67 -1.7 333,454 - BT0288 0.67 -0.1 333,456 - BT0288 0.68 -1.7 333,456 - BT0288 0.68 -0.1 333,460 + BT0288 0.68 -2.4 333,460 + BT0288 0.68 -2.1 333,461 - BT0288 0.68 -2.4 333,517 + BT0288 0.72 -1.1 333,517 + BT0288 0.72 -1.1 333,517 + BT0288 0.72 -3.2 333,518 - BT0288 0.72 -2.4 333,540 + BT0288 0.73 -2.1 333,540 + BT0288 0.73 -1.1 333,540 + BT0288 0.73 -1.7 333,542 + BT0288 0.73 -0.1 333,557 - BT0288 0.74 -2.5 333,560 + BT0288 0.74 -1.9 333,665 + BT0288 0.81 -1.7 333,700 - BT0288 0.84 -3.2 333,735 - BT0288 0.86 -1.7 333,768 - BT0288 0.88 -2.7 333,768 - BT0288 0.88 -1.7 333,784 + BT0288 0.89 -4.3 333,800 - -2.4 333,810 + -0.1 333,816 - -0.1 333,826 - -1.7 333,827 + +2.1 333,879 - -0.1 333,931 + -0.7 333,949 - -0.1 333,972 + +0.5 333,986 + -0.1 334,136 - -2.4 334,136 - -1.1 334,136 - -1.4 334,136 - -0.7 334,249 + -1.2 334,268 - -1.7 334,268 - -0.1 334,362 - -3.2 334,364 - -1.1 334,364 - -2.1 334,369 - -1.1 334,369 - -2.4 334,369 - -2.1 334,371 - -0.7 334,371 - -1.3 334,517 + BT0289 0.11 -0.1 334,546 + BT0289 0.13 +0.9 334,688 - BT0289 0.18 -1.1 334,697 - BT0289 0.18 -2.1 334,891 + BT0289 0.25 +0.5 334,904 - BT0289 0.26 -1.3
Or see this region's nucleotide sequence