Strain Fitness in Bacteroides thetaiotaomicron VPI-5482 around BT3533

Experiment: (+)-Arabinogalactan; autoclaved 5 mg/ml (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	(+)-Arabinogalactan; autoclaved 5 mg/ml (C)
4,569,702	+		BT3532	0.69	-1.5
4,569,750	+		BT3532	0.73	-1.1
4,569,751	-		BT3532	0.73	-1.5
4,569,759	-		BT3532	0.74	-1.0
4,569,825	-		BT3532	0.80	-1.5
4,569,833	+		BT3532	0.80	-1.3
4,569,833	+		BT3532	0.80	-0.5
4,569,834	-		BT3532	0.80	+0.0
4,569,834	-		BT3532	0.80	+0.0
4,569,834	-		BT3532	0.80	-3.5
4,569,834	-		BT3532	0.80	-1.0
4,569,835	+		BT3532	0.80	+0.6
4,569,860	+		BT3532	0.83	-2.0
4,569,860	+		BT3532	0.83	-1.3
4,569,861	-		BT3532	0.83	+0.0
4,569,862	+		BT3532	0.83	-2.5
4,569,862	+		BT3532	0.83	-1.6
4,569,907	-		BT3532	0.87	-1.5
4,569,915	+		BT3532	0.87	-0.7
4,569,952	+				-1.4
4,570,012	+				-1.7
4,570,012	+				-1.8
4,570,013	-				-0.5
4,570,027	-				+2.2
4,570,048	-				-1.5
4,570,048	-				+0.6
4,570,133	-				-1.4
4,570,195	+				-3.1
4,570,195	+				-0.3
4,570,196	-				-2.2
4,570,196	-				-1.0
4,570,230	-				-1.1
4,570,263	+				-1.0
4,570,263	+				-1.7
4,570,271	+				-2.0
4,570,272	-				-0.5
4,570,285	+				-1.7
4,570,289	+				-1.5
4,570,325	+				+0.4
4,570,326	-				-0.9
4,570,326	-				-1.5
4,570,342	+				-1.0
4,570,342	+				-2.0
4,570,343	-				+0.5
4,570,347	+				-1.4
4,570,348	-				+2.4
4,570,402	+				-1.5
4,570,480	-				-1.3
4,570,486	-				-3.0
4,570,486	-				-1.8
4,570,504	+				-1.2
4,570,505	-				-2.8
4,570,506	+				-1.0
4,570,545	+				-1.2
4,570,559	+				-1.9
4,570,560	-				-2.9
4,570,560	-				-2.4
4,570,561	+				+0.5
4,570,562	-				-2.2
4,570,672	+				-3.0
4,570,672	+				-0.7
4,570,719	-				-1.9
4,570,767	+				-1.0
4,570,768	-				-0.7
4,570,819	+				-2.4
4,570,819	+				-1.0
4,570,819	+				-2.0
4,570,820	-				-0.3
4,570,825	-				-0.1
4,570,829	+				+0.3
4,570,829	+				-1.0
4,570,840	-		BT3533	0.10	-1.5
4,570,860	+		BT3533	0.12	-1.2
4,570,861	-		BT3533	0.12	-1.0
4,570,861	-		BT3533	0.12	+1.0
4,570,876	-		BT3533	0.13	-1.7
4,570,897	+		BT3533	0.14	-3.0
4,570,897	+		BT3533	0.14	-1.6
4,570,914	-		BT3533	0.15	-0.5
4,570,915	+		BT3533	0.15	-0.5
4,570,930	-		BT3533	0.16	+1.6
4,570,932	+		BT3533	0.16	+0.0
4,570,945	+		BT3533	0.17	-1.1
4,570,995	-		BT3533	0.20	-2.4
4,571,026	+		BT3533	0.22	-1.3
4,571,027	-		BT3533	0.22	-1.8
4,571,027	-		BT3533	0.22	+0.0
4,571,061	-		BT3533	0.24	-1.5
4,571,073	-		BT3533	0.25	-2.8
4,571,073	-		BT3533	0.25	-3.0
4,571,117	+		BT3533	0.28	-2.5
4,571,118	-		BT3533	0.28	-2.0
4,571,118	-		BT3533	0.28	-3.1
4,571,171	+		BT3533	0.31	-0.5
4,571,194	-		BT3533	0.32	-2.3
4,571,221	-		BT3533	0.34	-1.8
4,571,273	+		BT3533	0.37	-1.0
4,571,277	-		BT3533	0.38	-0.8
4,571,284	-		BT3533	0.38	+0.0
4,571,324	-		BT3533	0.40	-1.0
4,571,374	+		BT3533	0.44	-4.2
4,571,375	-		BT3533	0.44	-1.5
4,571,375	-		BT3533	0.44	-1.4
4,571,375	-		BT3533	0.44	-1.8
4,571,431	-		BT3533	0.47	+0.0
4,571,448	+		BT3533	0.48	-1.5
4,571,501	+		BT3533	0.51	-1.8
4,571,568	-		BT3533	0.56	-1.5
4,571,569	+		BT3533	0.56	-3.0
4,571,570	-		BT3533	0.56	-1.5
4,571,570	-		BT3533	0.56	-2.1
4,571,570	-		BT3533	0.56	-2.0
4,571,604	-		BT3533	0.58	-1.0
4,571,643	+		BT3533	0.60	+0.0
4,571,643	+		BT3533	0.60	+1.0
4,571,647	-		BT3533	0.60	-1.0
4,571,647	-		BT3533	0.60	-1.0
4,571,649	+		BT3533	0.61	-2.0
4,571,683	+		BT3533	0.63	-1.0
4,571,691	+		BT3533	0.63	+0.0
4,571,707	-		BT3533	0.64	-1.0
4,571,707	-		BT3533	0.64	-1.1
4,571,707	-		BT3533	0.64	-1.5
4,571,707	-		BT3533	0.64	-0.6
4,571,737	-		BT3533	0.66	-1.4
4,571,772	-		BT3533	0.68	-1.5
4,571,772	-		BT3533	0.68	-1.5
4,571,789	+		BT3533	0.69	-1.8
4,571,800	-		BT3533	0.70	-0.9
4,571,811	-		BT3533	0.71	-2.6
4,571,815	-		BT3533	0.71	-1.3
4,571,819	+		BT3533	0.71	-3.0
4,571,819	+		BT3533	0.71	-1.5
4,571,850	+		BT3533	0.73	-1.0
4,571,850	+		BT3533	0.73	-1.0
4,571,857	-		BT3533	0.73	-1.9
4,571,911	+		BT3533	0.77	-1.5
4,571,925	+		BT3533	0.78	-1.8
4,571,975	+		BT3533	0.81	-1.2
4,571,999	-		BT3533	0.82	-0.8
4,572,022	-		BT3533	0.84	-1.7
4,572,022	-		BT3533	0.84	-0.3
4,572,024	-		BT3533	0.84	+0.0
4,572,036	+		BT3533	0.85	-1.0
4,572,039	+		BT3533	0.85	-0.5
4,572,071	+		BT3533	0.87	-1.3
4,572,072	-		BT3533	0.87	-2.8
4,572,072	-		BT3533	0.87	-1.7
4,572,072	-		BT3533	0.87	+0.3
4,572,085	+		BT3533	0.88	-2.0
4,572,085	+		BT3533	0.88	-1.5
4,572,108	-		BT3533	0.89	-0.4
4,572,153	+				-2.3
4,572,154	-				-1.5
4,572,159	+				-1.0
4,572,173	+				-1.1
4,572,173	+				-2.3
4,572,260	+				+0.0
4,572,260	+				+0.0
4,572,286	+				-1.0
4,572,295	+				-2.3
4,572,296	-				-1.5
4,572,296	-				-1.2
4,572,296	-				-1.8
4,572,471	-		BT3534	0.24	-1.7
4,572,471	-		BT3534	0.24	+1.0
4,572,471	-		BT3534	0.24	-2.0
4,572,524	-		BT3534	0.32	-1.5
4,572,529	+		BT3534	0.33	-1.0
4,572,529	+		BT3534	0.33	-2.3
4,572,541	-		BT3534	0.35	+0.0
4,572,582	-		BT3534	0.41	-1.0
4,572,645	-		BT3534	0.50	+0.0
4,572,688	+		BT3534	0.56	-2.8
4,572,689	-		BT3534	0.56	-3.2
4,572,689	-		BT3534	0.56	-1.3
4,572,689	-		BT3534	0.56	-0.8
4,572,689	-		BT3534	0.56	-0.5
4,572,821	+		BT3534	0.76	-1.9
4,572,837	-		BT3534	0.78	-1.0
4,572,943	-				-0.2
4,572,948	-				-1.0
4,572,959	+				+1.6
4,572,960	-				-1.5
4,572,968	+				-1.5
4,573,206	+		BT3535	0.16	-0.4