Experiment: (+)-Arabinogalactan; autoclaved 5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BT0190 and BT0191 are separated by 23 nucleotides BT0191 and BT0192 are separated by 27 nucleotides
BT0190: BT0190 - putative outer membrane protein, probably involved in nutrient binding (NCBI ptt file), at 200,124 to 203,564
BT0190
BT0191: BT0191 - putative outer membrane protein, probably involved in nutrient binding (NCBI ptt file), at 203,588 to 204,979
BT0191
BT0192: BT0192 - cell surface protein (NCBI ptt file), at 205,007 to 206,974
BT0192
Position (kb) 203
204
205 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1 at 202.631 kb on + strand, within BT0190 at 202.699 kb on + strand, within BT0190 at 202.761 kb on + strand, within BT0190 at 202.863 kb on + strand, within BT0190 at 202.864 kb on - strand, within BT0190 at 202.864 kb on - strand, within BT0190 at 202.899 kb on + strand, within BT0190 at 203.049 kb on - strand, within BT0190 at 203.053 kb on - strand, within BT0190 at 203.053 kb on - strand, within BT0190 at 203.054 kb on + strand, within BT0190 at 203.096 kb on + strand, within BT0190 at 203.175 kb on - strand, within BT0190 at 203.284 kb on - strand at 203.326 kb on - strand at 203.439 kb on - strand at 203.468 kb on - strand at 203.553 kb on - strand at 203.562 kb on + strand at 203.563 kb on - strand at 203.573 kb on - strand at 203.692 kb on + strand at 203.693 kb on - strand at 203.693 kb on - strand at 203.697 kb on + strand at 203.697 kb on + strand at 203.724 kb on + strand at 203.920 kb on - strand, within BT0191 at 203.971 kb on + strand, within BT0191 at 203.972 kb on - strand, within BT0191 at 203.990 kb on - strand, within BT0191 at 204.032 kb on - strand, within BT0191 at 204.036 kb on - strand, within BT0191 at 204.169 kb on + strand, within BT0191 at 204.301 kb on - strand, within BT0191 at 204.309 kb on - strand, within BT0191 at 204.337 kb on - strand, within BT0191 at 204.434 kb on - strand, within BT0191 at 204.529 kb on - strand, within BT0191 at 204.586 kb on + strand, within BT0191 at 204.586 kb on + strand, within BT0191 at 204.608 kb on - strand, within BT0191 at 204.711 kb on + strand, within BT0191 at 204.866 kb on - strand at 204.884 kb on - strand at 204.914 kb on - strand at 204.914 kb on - strand at 205.190 kb on - strand at 205.193 kb on - strand at 205.525 kb on + strand, within BT0192 at 205.631 kb on - strand, within BT0192 at 205.689 kb on - strand, within BT0192 at 205.691 kb on - strand, within BT0192 at 205.696 kb on + strand, within BT0192 at 205.750 kb on + strand, within BT0192 at 205.804 kb on + strand, within BT0192 at 205.813 kb on + strand, within BT0192 at 205.829 kb on - strand, within BT0192 at 205.879 kb on + strand, within BT0192 at 205.971 kb on - strand, within BT0192 at 205.971 kb on - strand, within BT0192 at 205.973 kb on - strand, within BT0192
Per-strain Table
Position Strand Gene LocusTag Fraction (+)-Arabinogalactan; autoclaved 5 mg/ml (C) remove 202,631 + BT0190 0.73 -1.9 202,699 + BT0190 0.75 -1.4 202,761 + BT0190 0.77 -0.1 202,863 + BT0190 0.80 -1.8 202,864 - BT0190 0.80 -0.9 202,864 - BT0190 0.80 -2.2 202,899 + BT0190 0.81 -2.1 203,049 - BT0190 0.85 -1.4 203,053 - BT0190 0.85 -1.8 203,053 - BT0190 0.85 -0.1 203,054 + BT0190 0.85 -0.1 203,096 + BT0190 0.86 -2.1 203,175 - BT0190 0.89 -0.9 203,284 - -3.1 203,326 - -3.1 203,439 - -0.1 203,468 - -1.1 203,553 - -1.1 203,562 + -0.1 203,563 - -0.7 203,573 - -2.7 203,692 + -1.1 203,693 - -0.6 203,693 - -0.7 203,697 + -0.1 203,697 + -1.1 203,724 + +0.9 203,920 - BT0191 0.24 -1.8 203,971 + BT0191 0.28 +0.9 203,972 - BT0191 0.28 -1.4 203,990 - BT0191 0.29 -1.6 204,032 - BT0191 0.32 -2.1 204,036 - BT0191 0.32 -1.7 204,169 + BT0191 0.42 -0.1 204,301 - BT0191 0.51 -2.7 204,309 - BT0191 0.52 -2.9 204,337 - BT0191 0.54 -1.1 204,434 - BT0191 0.61 -1.1 204,529 - BT0191 0.68 -2.1 204,586 + BT0191 0.72 -1.3 204,586 + BT0191 0.72 -1.1 204,608 - BT0191 0.73 +0.9 204,711 + BT0191 0.81 -0.1 204,866 - -1.4 204,884 - -0.1 204,914 - -0.1 204,914 - -0.5 205,190 - -0.9 205,193 - +1.5 205,525 + BT0192 0.26 -2.1 205,631 - BT0192 0.32 -0.1 205,689 - BT0192 0.35 -1.4 205,691 - BT0192 0.35 -1.2 205,696 + BT0192 0.35 -0.1 205,750 + BT0192 0.38 -1.1 205,804 + BT0192 0.40 -2.4 205,813 + BT0192 0.41 -1.7 205,829 - BT0192 0.42 -1.9 205,879 + BT0192 0.44 -1.1 205,971 - BT0192 0.49 -2.1 205,971 - BT0192 0.49 -0.1 205,973 - BT0192 0.49 -5.2
Or see this region's nucleotide sequence