Experiment: (+)-Arabinogalactan; autoclaved 5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BT0169 and BT0170 are separated by 119 nucleotides BT0170 and BT0171 are separated by 171 nucleotides
BT0169: BT0169 - conserved hypothetical protein (NCBI ptt file), at 177,407 to 178,462
BT0169
BT0170: BT0170 - conserved hypothetical protein (NCBI ptt file), at 178,582 to 178,935
BT0170
BT0171: BT0171 - conserved hypothetical protein (NCBI ptt file), at 179,107 to 180,390
BT0171
Position (kb) 178
179 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 177.709 kb on + strand, within BT0169 at 177.784 kb on + strand, within BT0169 at 177.793 kb on + strand, within BT0169 at 177.908 kb on - strand, within BT0169 at 178.010 kb on - strand, within BT0169 at 178.010 kb on - strand, within BT0169 at 178.025 kb on - strand, within BT0169 at 178.027 kb on - strand, within BT0169 at 178.169 kb on - strand at 178.348 kb on + strand, within BT0169 at 178.349 kb on - strand, within BT0169 at 178.440 kb on - strand at 178.448 kb on + strand at 178.475 kb on - strand at 178.513 kb on + strand at 178.515 kb on + strand at 178.523 kb on - strand at 178.535 kb on + strand at 178.621 kb on + strand, within BT0170 at 178.675 kb on + strand, within BT0170 at 178.706 kb on - strand, within BT0170 at 178.718 kb on - strand, within BT0170 at 178.873 kb on + strand, within BT0170 at 178.912 kb on + strand at 178.931 kb on - strand at 178.957 kb on - strand at 178.957 kb on - strand at 178.962 kb on - strand at 178.962 kb on - strand at 178.992 kb on + strand at 179.002 kb on + strand at 179.078 kb on + strand at 179.104 kb on - strand at 179.119 kb on - strand at 179.162 kb on - strand at 179.198 kb on + strand at 179.307 kb on + strand, within BT0171 at 179.336 kb on + strand, within BT0171 at 179.337 kb on - strand, within BT0171 at 179.341 kb on - strand, within BT0171 at 179.391 kb on - strand, within BT0171 at 179.411 kb on + strand, within BT0171 at 179.424 kb on + strand, within BT0171 at 179.550 kb on + strand, within BT0171 at 179.552 kb on + strand, within BT0171 at 179.572 kb on - strand, within BT0171 at 179.650 kb on + strand, within BT0171 at 179.710 kb on + strand, within BT0171 at 179.720 kb on + strand, within BT0171 at 179.740 kb on + strand, within BT0171 at 179.760 kb on + strand, within BT0171 at 179.763 kb on + strand, within BT0171 at 179.790 kb on + strand, within BT0171 at 179.864 kb on - strand, within BT0171 at 179.932 kb on + strand, within BT0171 at 179.932 kb on + strand, within BT0171
Per-strain Table
Position Strand Gene LocusTag Fraction (+)-Arabinogalactan; autoclaved 5 mg/ml (C) remove 177,709 + BT0169 0.29 -1.4 177,784 + BT0169 0.36 -0.1 177,793 + BT0169 0.37 -0.6 177,908 - BT0169 0.47 -2.9 178,010 - BT0169 0.57 -2.5 178,010 - BT0169 0.57 -0.1 178,025 - BT0169 0.59 -1.1 178,027 - BT0169 0.59 -0.1 178,169 - -2.1 178,348 + BT0169 0.89 -0.0 178,349 - BT0169 0.89 -1.0 178,440 - -1.0 178,448 + -2.7 178,475 - -0.0 178,513 + +1.0 178,515 + -0.6 178,523 - -2.9 178,535 + -0.0 178,621 + BT0170 0.11 -2.4 178,675 + BT0170 0.26 -2.6 178,706 - BT0170 0.35 -0.0 178,718 - BT0170 0.38 -2.9 178,873 + BT0170 0.82 -3.1 178,912 + -2.0 178,931 - -0.9 178,957 - -1.7 178,957 - -3.4 178,962 - -1.0 178,962 - -0.0 178,992 + -0.5 179,002 + +1.0 179,078 + -1.3 179,104 - -0.0 179,119 - -1.0 179,162 - -2.0 179,198 + +1.0 179,307 + BT0171 0.16 -1.1 179,336 + BT0171 0.18 -1.1 179,337 - BT0171 0.18 -0.1 179,341 - BT0171 0.18 -1.1 179,391 - BT0171 0.22 -0.8 179,411 + BT0171 0.24 -0.1 179,424 + BT0171 0.25 -1.1 179,550 + BT0171 0.35 -0.5 179,552 + BT0171 0.35 -1.6 179,572 - BT0171 0.36 -0.1 179,650 + BT0171 0.42 -1.1 179,710 + BT0171 0.47 -2.2 179,720 + BT0171 0.48 -2.1 179,740 + BT0171 0.49 -2.9 179,760 + BT0171 0.51 -1.6 179,763 + BT0171 0.51 -0.5 179,790 + BT0171 0.53 -2.1 179,864 - BT0171 0.59 -1.6 179,932 + BT0171 0.64 -0.1 179,932 + BT0171 0.64 -1.6
Or see this region's nucleotide sequence