Strain Fitness in Bacteroides thetaiotaomicron VPI-5482 around BT3703

Experiment: Glycogen; filtered 2.5 mg/ml (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Glycogen; filtered 2.5 mg/ml (C)
4,809,597	+	SusC	BT3702	0.72	-1.6
4,809,637	-	SusC	BT3702	0.74	-4.0
4,809,795	-	SusC	BT3702	0.79	-3.9
4,809,992	+	SusC	BT3702	0.85	-1.0
4,810,031	+	SusC	BT3702	0.87	-4.5
4,810,031	+	SusC	BT3702	0.87	-3.0
4,810,035	+	SusC	BT3702	0.87	-0.0
4,810,107	+	SusC	BT3702	0.89	-3.0
4,810,110	+	SusC	BT3702	0.89	-4.0
4,810,111	-	SusC	BT3702	0.89	-3.9
4,810,111	-	SusC	BT3702	0.89	-2.4
4,810,147	-				-3.6
4,810,209	+				-0.0
4,810,210	-				-1.6
4,810,210	-				-3.0
4,810,210	-				-5.6
4,810,387	-				-1.0
4,810,388	+				-2.6
4,810,389	-				-4.2
4,810,465	-				-0.2
4,810,484	-				+0.6
4,810,484	-				-0.0
4,810,487	+				-3.6
4,810,561	+				-2.8
4,810,571	-				-0.0
4,810,584	-				-0.9
4,810,641	+				-0.0
4,810,642	-				-2.4
4,810,646	+				-4.2
4,810,713	+				-2.6
4,810,715	+				-0.0
4,810,716	-				-2.8
4,810,775	+				-3.8
4,810,776	-				-2.6
4,810,818	+	SusB	BT3703	0.11	-3.8
4,810,818	+	SusB	BT3703	0.11	-1.0
4,810,819	-	SusB	BT3703	0.11	-3.0
4,810,846	+	SusB	BT3703	0.12	-6.3
4,810,851	-	SusB	BT3703	0.12	-2.0
4,810,893	-	SusB	BT3703	0.14	-2.4
4,810,893	-	SusB	BT3703	0.14	-4.1
4,810,894	-	SusB	BT3703	0.14	-1.6
4,810,916	+	SusB	BT3703	0.15	-2.0
4,810,942	+	SusB	BT3703	0.16	-3.6
4,811,021	+	SusB	BT3703	0.20	-2.4
4,811,022	-	SusB	BT3703	0.20	-0.0
4,811,033	+	SusB	BT3703	0.20	-0.6
4,811,034	-	SusB	BT3703	0.20	-3.8
4,811,065	+	SusB	BT3703	0.22	-1.0
4,811,066	-	SusB	BT3703	0.22	-3.0
4,811,172	+	SusB	BT3703	0.26	-2.0
4,811,172	+	SusB	BT3703	0.26	-3.8
4,811,173	-	SusB	BT3703	0.27	-2.0
4,811,177	+	SusB	BT3703	0.27	-0.0
4,811,177	+	SusB	BT3703	0.27	-2.9
4,811,178	-	SusB	BT3703	0.27	-4.0
4,811,180	-	SusB	BT3703	0.27	-2.8
4,811,180	-	SusB	BT3703	0.27	-4.6
4,811,180	-	SusB	BT3703	0.27	-1.6
4,811,180	-	SusB	BT3703	0.27	-1.0
4,811,246	+	SusB	BT3703	0.30	-0.8
4,811,251	-	SusB	BT3703	0.30	-1.6
4,811,327	+	SusB	BT3703	0.33	-3.8
4,811,328	-	SusB	BT3703	0.34	-1.6
4,811,328	-	SusB	BT3703	0.34	-0.0
4,811,389	+	SusB	BT3703	0.36	-3.6
4,811,390	-	SusB	BT3703	0.36	-3.0
4,811,415	-	SusB	BT3703	0.37	-1.6
4,811,470	+	SusB	BT3703	0.40	-4.2
4,811,526	-	SusB	BT3703	0.42	-1.6
4,811,638	+	SusB	BT3703	0.47	-6.1
4,811,812	+	SusB	BT3703	0.55	-2.8
4,811,813	-	SusB	BT3703	0.55	-1.6
4,811,823	-	SusB	BT3703	0.56	-0.0
4,811,823	-	SusB	BT3703	0.56	-1.6
4,811,889	+	SusB	BT3703	0.59	-0.0
4,811,890	-	SusB	BT3703	0.59	-0.0
4,811,964	+	SusB	BT3703	0.62	-1.6
4,811,964	+	SusB	BT3703	0.62	-5.0
4,811,965	-	SusB	BT3703	0.62	-1.0
4,812,015	+	SusB	BT3703	0.65	-1.6
4,812,015	+	SusB	BT3703	0.65	-4.6
4,812,042	+	SusB	BT3703	0.66	-2.8
4,812,042	+	SusB	BT3703	0.66	-5.9
4,812,083	+	SusB	BT3703	0.68	-2.4
4,812,084	-	SusB	BT3703	0.68	-0.0
4,812,121	+	SusB	BT3703	0.69	-1.9
4,812,121	+	SusB	BT3703	0.69	-0.0
4,812,212	+	SusB	BT3703	0.73	-2.0
4,812,213	-	SusB	BT3703	0.73	-1.0
4,812,233	+	SusB	BT3703	0.74	-3.2
4,812,233	+	SusB	BT3703	0.74	-1.0
4,812,234	-				-2.4
4,812,385	-	SusB	BT3703	0.81	-2.4
4,812,431	+	SusB	BT3703	0.83	-3.2
4,812,592	-				-1.6
4,812,652	-				-2.6
4,812,703	+				-2.0
4,812,805	-				-3.3
4,812,901	-				+1.0
4,812,954	-				-0.0
4,812,954	-				-1.6
4,812,996	+				-2.2
4,813,074	-				-1.2
4,813,172	-				-0.6
4,813,431	+	SusA	BT3704	0.23	+0.6
4,813,434	-	SusA	BT3704	0.24	-2.4
4,813,460	+	SusA	BT3704	0.25	-2.4
4,813,461	-	SusA	BT3704	0.25	-2.6
4,813,502	-	SusA	BT3704	0.27	+1.0
4,813,502	-	SusA	BT3704	0.27	-0.6
4,813,593	-	SusA	BT3704	0.32	+0.6
4,813,778	+	SusA	BT3704	0.42	-1.6
4,813,779	-	SusA	BT3704	0.42	-2.1