Strain Fitness in Bacteroides thetaiotaomicron VPI-5482 around BT4541

Experiment: Amylopectin from Potato; autoclaved 2.5 mg/ml (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Amylopectin from Potato; autoclaved 2.5 mg/ml (C)
5,961,331	-		BT4540	0.22	-1.0
5,961,352	+		BT4540	0.23	-1.6
5,961,352	+		BT4540	0.23	-1.4
5,961,353	-		BT4540	0.24	-2.1
5,961,366	+		BT4540	0.25	-1.6
5,961,366	+		BT4540	0.25	-1.4
5,961,396	+		BT4540	0.27	+1.2
5,961,406	-		BT4540	0.28	-1.0
5,961,442	+		BT4540	0.30	-1.8
5,961,443	-		BT4540	0.31	+0.2
5,961,503	+		BT4540	0.35	-0.8
5,961,503	-		BT4540	0.35	-2.2
5,961,518	+		BT4540	0.36	+0.2
5,961,721	-		BT4540	0.52	-1.6
5,961,753	+		BT4540	0.55	-2.1
5,961,786	+		BT4540	0.57	-1.4
5,961,790	-		BT4540	0.57	+1.2
5,961,832	-		BT4540	0.61	-1.4
5,961,833	+		BT4540	0.61	-0.8
5,961,833	+		BT4540	0.61	+0.0
5,961,869	-		BT4540	0.64	-1.4
5,961,919	+		BT4540	0.68	-2.6
5,961,931	-		BT4540	0.68	-2.1
5,961,949	+		BT4540	0.70	+0.3
5,961,950	-		BT4540	0.70	-1.3
5,961,953	+		BT4540	0.70	-2.9
5,961,954	-		BT4540	0.70	-0.8
5,962,024	+		BT4540	0.76	+0.2
5,962,025	-		BT4540	0.76	+0.2
5,962,026	+		BT4540	0.76	-0.9
5,962,035	+		BT4540	0.77	-1.4
5,962,046	+		BT4540	0.77	-2.8
5,962,076	+		BT4540	0.80	+0.2
5,962,077	-		BT4540	0.80	-0.8
5,962,088	+		BT4540	0.81	-0.8
5,962,118	+		BT4540	0.83	-2.4
5,962,122	+		BT4540	0.83	-1.6
5,962,122	+		BT4540	0.83	-0.8
5,962,123	-		BT4540	0.83	+0.6
5,962,194	+		BT4540	0.89	+0.2
5,962,195	-		BT4540	0.89	-0.4
5,962,201	-		BT4540	0.89	-2.4
5,962,226	-				+0.2
5,962,226	-				+0.2
5,962,231	-				-1.2
5,962,244	-				-3.3
5,962,244	-				+1.2
5,962,245	+				-0.4
5,962,268	-				+0.2
5,962,311	-				-1.8
5,962,330	+				-2.6
5,962,332	+				-0.8
5,962,418	+		BT4541	0.15	-0.8
5,962,419	-		BT4541	0.15	+0.2
5,962,440	+		BT4541	0.18	-1.1
5,962,464	-		BT4541	0.22	-2.1
5,962,468	-		BT4541	0.23	-1.0
5,962,469	+		BT4541	0.23	-0.8
5,962,475	+		BT4541	0.24	+1.2
5,962,476	-		BT4541	0.24	-1.6
5,962,525	-		BT4541	0.33	+1.8
5,962,526	+		BT4541	0.33	-0.9
5,962,556	-		BT4541	0.38	-2.6
5,962,559	-		BT4541	0.38	-1.3
5,962,564	+		BT4541	0.39	-1.1
5,962,587	+		BT4541	0.43	-0.8
5,962,588	-		BT4541	0.43	-1.6
5,962,598	+		BT4541	0.45	-1.4
5,962,598	+		BT4541	0.45	+0.2
5,962,601	+		BT4541	0.45	-1.4
5,962,609	-		BT4541	0.46	+0.2
5,962,623	-		BT4541	0.49	-2.2
5,962,623	-		BT4541	0.49	-0.8
5,962,688	+		BT4541	0.60	+0.2
5,962,892	+				+0.8
5,962,892	+				+0.2
5,962,899	-				-1.4
5,962,946	-		BT4542	0.15	-1.1
5,962,956	+		BT4542	0.17	-0.5
5,962,964	-		BT4542	0.18	-0.6
5,962,966	-		BT4542	0.18	-1.6
5,962,995	+		BT4542	0.24	-2.1
5,963,004	-		BT4542	0.25	-1.5
5,963,067	-		BT4542	0.37	+0.2
5,963,068	+		BT4542	0.37	-1.9
5,963,069	-		BT4542	0.37	-1.1
5,963,103	+		BT4542	0.43	-1.1
5,963,119	+		BT4542	0.46	-0.8
5,963,123	+		BT4542	0.47	-0.6
5,963,167	-		BT4542	0.55	+1.8
5,963,167	-		BT4542	0.55	+1.2
5,963,178	+		BT4542	0.57	+1.8
5,963,207	-		BT4542	0.62	-2.1
5,963,216	-		BT4542	0.63	-0.8
5,963,251	+		BT4542	0.70	-1.6
5,963,264	+		BT4542	0.72	-0.2
5,963,265	-		BT4542	0.72	+0.2
5,963,313	-		BT4542	0.81	+2.2
5,963,333	+		BT4542	0.85	-3.0
5,963,340	+		BT4542	0.86	-1.8
5,963,374	+				-1.8
5,963,375	-				-0.7
5,963,392	+				-0.8
5,963,393	-				-2.5
5,963,436	+				+1.8
5,963,437	-				+1.2
5,963,452	+				-2.4
5,963,471	-				-2.7
5,963,473	+				-1.4
5,963,496	-				-2.1
5,963,516	+				-1.6
5,963,549	+		BT4543	0.12	-2.5
5,963,570	-		BT4543	0.14	-3.4
5,963,570	-		BT4543	0.14	+0.2
5,963,610	+		BT4543	0.17	-0.6
5,963,654	-		BT4543	0.21	-0.8
5,963,724	-		BT4543	0.27	-1.4
5,963,800	+		BT4543	0.34	-1.9
5,963,800	+		BT4543	0.34	-1.4
5,963,832	-		BT4543	0.37	-1.1
5,963,843	-		BT4543	0.38	+0.8
5,963,875	+		BT4543	0.40	-0.4
5,963,884	+		BT4543	0.41	+0.2