Strain Fitness in Bacteroides thetaiotaomicron VPI-5482 around BT3336

Experiment: Amylopectin from Potato; autoclaved 2.5 mg/ml (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Amylopectin from Potato; autoclaved 2.5 mg/ml (C)
4,293,536	-				+1.2
4,293,536	-				-1.1
4,293,563	+				-2.1
4,293,570	-				-0.7
4,293,571	+				-1.8
4,293,571	+				-3.1
4,293,591	+				-1.8
4,293,667	+				-1.4
4,293,668	-				-2.0
4,293,757	-				-1.7
4,293,757	-				-0.8
4,293,830	+				-0.8
4,293,832	+				-0.9
4,293,832	+				-1.5
4,293,864	+				+2.2
4,293,865	-				-1.8
4,293,944	+		BT3335	0.17	+0.2
4,294,029	+		BT3335	0.31	-1.9
4,294,030	-		BT3335	0.31	+0.2
4,294,063	-		BT3335	0.36	+0.2
4,294,115	+		BT3335	0.44	-1.0
4,294,120	+		BT3335	0.45	-2.4
4,294,120	+		BT3335	0.45	-1.8
4,294,124	-		BT3335	0.45	-0.3
4,294,281	+		BT3335	0.70	-1.3
4,294,281	+		BT3335	0.70	+1.8
4,294,282	-		BT3335	0.70	-2.1
4,294,282	-		BT3335	0.70	-1.1
4,294,298	+		BT3335	0.72	+0.6
4,294,298	+				-0.8
4,294,323	+		BT3335	0.76	-1.7
4,294,323	+		BT3335	0.76	+0.2
4,294,473	-				-0.8
4,294,476	+				-1.4
4,294,477	-				-2.1
4,294,477	-				-0.3
4,294,580	-				-1.4
4,294,580	-				+0.8
4,294,682	-		BT3336	0.19	-1.8
4,294,856	+		BT3336	0.42	-1.5
4,294,857	-		BT3336	0.42	-2.8
4,294,887	-		BT3336	0.46	-0.8
4,294,912	+		BT3336	0.49	+0.2
4,294,912	+		BT3336	0.49	-1.7
4,294,916	+		BT3336	0.49	-1.2
4,294,917	-		BT3336	0.50	-1.4
4,294,965	-		BT3336	0.56	-0.4
4,294,965	-		BT3336	0.56	-1.2
4,294,965	-		BT3336	0.56	-1.4
4,294,965	-		BT3336	0.56	+0.8
4,294,965	-		BT3336	0.56	-0.8
4,294,970	-		BT3336	0.56	-2.6
4,294,980	+		BT3336	0.58	-0.5
4,295,003	-		BT3336	0.61	-1.8
4,295,037	-		BT3336	0.65	-1.0
4,295,093	-		BT3336	0.72	-1.2
4,295,093	-		BT3336	0.72	+0.2
4,295,139	-		BT3336	0.78	+0.2
4,295,198	-		BT3336	0.86	-1.8
4,295,232	+				-2.4
4,295,291	+				-1.4
4,295,309	-				+0.2
4,295,311	+				+0.2
4,295,314	-				+0.2
4,295,451	+				-1.4
4,295,485	+		BT3337	0.12	+0.2
4,295,559	-		BT3337	0.17	+0.5
4,295,595	+		BT3337	0.20	-0.8
4,295,595	+		BT3337	0.20	-1.0
4,295,615	+		BT3337	0.21	-0.2
4,295,621	-		BT3337	0.21	-1.0
4,295,621	-		BT3337	0.21	+0.2
4,295,677	-		BT3337	0.25	-1.0
4,295,677	-		BT3337	0.25	-1.8
4,295,717	+		BT3337	0.28	-2.5
4,295,822	-		BT3337	0.36	-0.8
4,295,873	-		BT3337	0.40	-1.6
4,295,933	+		BT3337	0.44	+0.2
4,295,975	-		BT3337	0.47	-2.0
4,295,975	-		BT3337	0.47	-1.7
4,296,032	+		BT3337	0.51	-0.0
4,296,032	+		BT3337	0.51	-2.6
4,296,119	-		BT3337	0.57	-1.9
4,296,182	-		BT3337	0.62	-1.9
4,296,186	+		BT3337	0.62	-1.8
4,296,187	-		BT3337	0.62	-0.8
4,296,187	-		BT3337	0.62	-1.6
4,296,187	-		BT3337	0.62	-0.7
4,296,187	-		BT3337	0.62	-0.8
4,296,208	+		BT3337	0.64	-0.5
4,296,222	-		BT3337	0.65	-1.4
4,296,302	+		BT3337	0.71	+0.2
4,296,303	-		BT3337	0.71	-0.8