Strain Fitness in Bacteroides thetaiotaomicron VPI-5482 around BT1900

Experiment: Amylopectin from Potato; autoclaved 2.5 mg/ml (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Amylopectin from Potato; autoclaved 2.5 mg/ml (C)
2,387,953	-		BT1898	0.83	-1.3
2,387,953	-		BT1898	0.83	-1.4
2,387,957	-		BT1898	0.84	-0.9
2,388,064	-				+1.7
2,388,079	+				-1.4
2,388,080	-				+0.1
2,388,135	+				-0.9
2,388,136	-				-2.7
2,388,136	-				-1.4
2,388,137	+				+0.7
2,388,149	-				-1.6
2,388,166	+				+1.1
2,388,331	+		BT1899	0.20	-1.2
2,388,332	-		BT1899	0.20	-0.4
2,388,336	+		BT1899	0.21	-1.3
2,388,336	+		BT1899	0.21	-0.9
2,388,353	+		BT1899	0.23	-2.2
2,388,354	-		BT1899	0.23	+1.7
2,388,378	-		BT1899	0.27	-2.4
2,388,439	-		BT1899	0.35	-0.9
2,388,446	+		BT1899	0.36	+0.1
2,388,523	-		BT1899	0.47	-1.4
2,388,524	+		BT1899	0.47	-1.7
2,388,559	+		BT1899	0.52	-0.5
2,388,560	-		BT1899	0.52	-1.4
2,388,601	+		BT1899	0.58	+1.7
2,388,669	+		BT1899	0.68	+0.1
2,388,670	-		BT1899	0.68	+0.1
2,388,670	-		BT1899	0.68	-1.2
2,388,701	+		BT1899	0.72	-1.4
2,388,726	+		BT1899	0.76	-1.4
2,388,752	+		BT1899	0.80	-1.3
2,388,753	-		BT1899	0.80	+0.1
2,388,774	-		BT1899	0.83	-1.4
2,388,780	+		BT1899	0.83	+2.4
2,388,783	-		BT1899	0.84	-0.2
2,388,798	-		BT1899	0.86	+1.7
2,388,851	-				-2.2
2,388,885	-				-2.7
2,389,015	+				-3.2
2,389,070	-		BT1900	0.12	-0.9
2,389,128	-		BT1900	0.17	-1.2
2,389,140	-		BT1900	0.17	-1.4
2,389,188	-		BT1900	0.21	-0.1
2,389,229	+		BT1900	0.24	-0.9
2,389,295	-		BT1900	0.29	-0.9
2,389,365	-		BT1900	0.34	-0.3
2,389,368	+		BT1900	0.35	-0.9
2,389,433	+		BT1900	0.40	+0.1
2,389,436	+		BT1900	0.40	+0.6
2,389,512	-		BT1900	0.46	-1.2
2,389,526	+		BT1900	0.47	-2.4
2,389,527	-		BT1900	0.47	-1.3
2,389,613	+		BT1900	0.53	-3.2
2,389,619	+		BT1900	0.54	+0.1
2,389,621	+		BT1900	0.54	-0.4
2,389,621	+		BT1900	0.54	-1.4
2,389,621	+		BT1900	0.54	-2.2
2,389,622	-		BT1900	0.54	-0.4
2,389,623	+		BT1900	0.54	+0.1
2,389,624	-		BT1900	0.54	-1.7
2,389,692	-		BT1900	0.59	-0.9
2,389,695	+		BT1900	0.59	-0.9
2,389,733	+		BT1900	0.62	-1.1
2,389,769	+		BT1900	0.65	+1.1
2,389,769	+		BT1900	0.65	-1.2
2,389,923	+		BT1900	0.77	-2.7
2,389,982	+		BT1900	0.81	-1.9
2,389,983	-		BT1900	0.81	+0.1
2,390,081	-		BT1900	0.89	-2.9
2,390,081	-		BT1900	0.89	-1.9
2,390,081	-		BT1900	0.89	+2.1
2,390,086	-		BT1900	0.89	-1.1
2,390,217	-				-0.2
2,390,219	-				+0.1
2,390,219	-				-1.5
2,390,225	-				-0.9
2,390,262	-				-1.4
2,390,279	-				+0.1
2,390,279	-				-0.4
2,390,279	-				-1.4
2,390,398	-				-1.2
2,390,398	-				+0.1
2,390,422	-				-0.9
2,390,430	-				-0.9
2,390,430	-				-0.4
2,390,477	-				+0.1
2,390,477	-				-0.9
2,390,477	-				-0.4
2,390,493	-				+0.1
2,390,501	-				+1.1
2,390,567	-				-1.9
2,390,665	+				+0.1
2,390,755	+				-1.8
2,390,756	-				-1.3
2,390,756	-				-4.0
2,390,756	-				-1.4
2,390,783	-				-1.1
2,390,843	+		BT1901	0.13	-1.4
2,390,855	+		BT1901	0.14	-1.1
2,390,856	-		BT1901	0.14	-0.4
2,390,868	+		BT1901	0.15	+0.1
2,390,915	+		BT1901	0.19	-1.7
2,390,916	-		BT1901	0.19	-0.9
2,390,923	+		BT1901	0.19	-3.9
2,390,932	-		BT1901	0.20	+0.1
2,391,005	-		BT1901	0.26	+1.7
2,391,019	-		BT1901	0.27	+1.1
2,391,093	-		BT1901	0.32	+0.1
2,391,159	+		BT1901	0.37	-1.0
2,391,161	+		BT1901	0.37	-2.4
2,391,161	+		BT1901	0.37	-1.8
2,391,162	-		BT1901	0.38	-0.8
2,391,162	-		BT1901	0.38	-1.4
2,391,162	-		BT1901	0.38	-3.0
2,391,220	+		BT1901	0.42	-0.9
2,391,221	-		BT1901	0.42	-1.2