Strain Fitness in Bacteroides thetaiotaomicron VPI-5482 around BT4273

Experiment: Glycogen; autoclaved 2.5 mg/ml (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Glycogen; autoclaved 2.5 mg/ml (C)
5,630,616	-		BT4272	0.70	-1.9
5,630,648	+		BT4272	0.71	-0.0
5,630,679	+		BT4272	0.72	-1.0
5,630,688	+		BT4272	0.72	-0.7
5,630,688	+		BT4272	0.72	-1.7
5,630,688	+		BT4272	0.72	-0.2
5,630,689	-		BT4272	0.72	-0.9
5,630,848	-		BT4272	0.77	-0.3
5,630,855	-		BT4272	0.77	-2.8
5,630,855	-		BT4272	0.77	-0.0
5,630,855	-		BT4272	0.77	-2.0
5,630,856	+		BT4272	0.78	-2.7
5,630,858	-		BT4272	0.78	-0.8
5,630,911	-		BT4272	0.79	-1.5
5,630,954	-		BT4272	0.81	-1.1
5,631,022	-		BT4272	0.83	-1.0
5,631,035	-		BT4272	0.84	+1.6
5,631,047	+		BT4272	0.84	-3.1
5,631,111	+		BT4272	0.86	-1.0
5,631,111	+		BT4272	0.86	-1.0
5,631,112	-		BT4272	0.86	+0.8
5,631,172	-		BT4272	0.88	-1.6
5,631,211	-		BT4272	0.89	-1.0
5,631,228	+		BT4272	0.90	-0.0
5,631,236	-				-1.0
5,631,260	+				-1.1
5,631,288	+				+0.1
5,631,332	-				-0.6
5,631,357	+				-1.0
5,631,358	-				-1.0
5,631,440	-				+1.0
5,631,443	+				-1.0
5,631,443	+				-1.0
5,631,448	+				+1.6
5,631,512	+				-1.7
5,631,512	+				-0.9
5,631,588	-				+0.6
5,631,595	-				-1.8
5,631,638	+				+0.7
5,631,655	+				-1.8
5,631,722	+				-0.0
5,631,724	+				-1.2
5,631,732	+				-0.0
5,631,768	+		BT4273	0.11	-0.8
5,631,781	-		BT4273	0.12	-0.6
5,631,830	-		BT4273	0.15	-1.6
5,631,831	+		BT4273	0.15	-1.0
5,631,956	-		BT4273	0.23	-0.0
5,631,998	-		BT4273	0.26	-0.9
5,631,998	-		BT4273	0.26	-1.3
5,632,006	-		BT4273	0.26	-1.6
5,632,150	-		BT4273	0.36	-2.0
5,632,153	+		BT4273	0.36	-3.2
5,632,154	-		BT4273	0.36	-0.3
5,632,154	-		BT4273	0.36	+1.0
5,632,154	-		BT4273	0.36	-2.0
5,632,160	-		BT4273	0.36	-1.7
5,632,224	-		BT4273	0.40	-0.2
5,632,227	+		BT4273	0.41	-0.0
5,632,228	-		BT4273	0.41	-0.0
5,632,275	+		BT4273	0.44	-0.9
5,632,276	-		BT4273	0.44	-1.6
5,632,294	-		BT4273	0.45	-1.0
5,632,304	-		BT4273	0.46	-0.0
5,632,324	-		BT4273	0.47	-0.0
5,632,338	+		BT4273	0.48	+0.3
5,632,397	+		BT4273	0.52	+1.4
5,632,398	-		BT4273	0.52	-1.0
5,632,398	-		BT4273	0.52	-0.0
5,632,409	-		BT4273	0.52	-0.6
5,632,424	+		BT4273	0.53	-0.6
5,632,425	-		BT4273	0.53	-0.2
5,632,555	+		BT4273	0.62	-0.4
5,632,565	+		BT4273	0.62	-2.3
5,632,566	-				-1.2
5,632,567	+		BT4273	0.62	-1.6
5,632,568	-		BT4273	0.62	-0.2
5,632,568	-				-0.0
5,632,568	-		BT4273	0.62	-0.0
5,632,568	-		BT4273	0.62	-1.0
5,632,568	-		BT4273	0.62	-1.0
5,632,569	+		BT4273	0.63	+0.4
5,632,694	-		BT4273	0.71	-0.6
5,632,737	-		BT4273	0.73	-1.2
5,632,756	+		BT4273	0.75	+1.0
5,632,757	-		BT4273	0.75	-0.0
5,632,757	-		BT4273	0.75	+0.2
5,632,840	+		BT4273	0.80	-0.8
5,632,896	-		BT4273	0.84	-1.0
5,632,926	+		BT4273	0.85	-0.1
5,632,937	-		BT4273	0.86	-1.0
5,632,937	-		BT4273	0.86	-1.6
5,632,985	+		BT4273	0.89	-0.6
5,632,988	+		BT4273	0.89	+2.3
5,632,989	-		BT4273	0.89	-0.0
5,633,066	-				-1.8
5,633,084	-				-1.3
5,633,108	+				-0.7
5,633,110	+				-0.0
5,633,111	-				+0.4
5,633,114	+				-0.7
5,633,174	+				-0.0
5,633,207	-				-0.0
5,633,214	-				+1.0
5,633,218	+				+0.3
5,633,225	+				-1.3
5,633,226	-				-1.3
5,633,261	-				-1.0
5,633,332	+				-1.6
5,633,360	-				-0.0
5,633,377	+				-0.8
5,633,404	+				-1.0
5,633,444	-				+0.6
5,633,447	+				+0.3
5,633,447	+				-0.6
5,633,456	+				-0.0
5,633,471	-				-0.4
5,633,471	-				-1.0
5,633,567	+				-1.0
5,633,616	+				-0.0
5,633,618	+				-0.7
5,633,639	+				-1.2
5,633,678	+				+1.0
5,633,678	+				-0.7
5,633,731	-				-0.0
5,633,736	+				+0.3
5,633,750	+				-1.0
5,633,779	+				-2.6
5,633,783	+				-2.3
5,633,783	+				+0.6
5,633,784	-				-0.0
5,633,822	-				+0.6
5,633,846	+		BT4274	0.11	-1.0
5,633,859	+		BT4274	0.12	-0.6
5,633,894	+		BT4274	0.17	-0.0
5,633,923	+		BT4274	0.20	-1.0
5,633,940	+		BT4274	0.22	-2.3
5,633,987	+		BT4274	0.28	+0.6
5,633,988	-		BT4274	0.29	-0.4
5,633,988	-		BT4274	0.29	-1.0
5,634,007	-		BT4274	0.31	-2.6
5,634,049	+		BT4274	0.36	-1.0
5,634,056	-		BT4274	0.37	+1.4
5,634,094	+		BT4274	0.42	+2.3
5,634,145	+		BT4274	0.48	-1.8