Strain Fitness in Bacteroides thetaiotaomicron VPI-5482 around BT1202

Experiment: Galactan from Potato; filtered 2.5 mg/ml (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntBT1200 and BT1201 are separated by 5 nucleotidesBT1201 and BT1202 are separated by 82 nucleotidesBT1202 and BT1203 overlap by 22 nucleotides BT1200: BT1200 - hypothetical protein (NCBI ptt file), at 1,496,433 to 1,496,927 BT1200 BT1201: BT1201 - conserved hypothetical protein (NCBI ptt file), at 1,496,933 to 1,497,562 BT1201 BT1202: BT1202 - UDP-N-acetylglucosamine 2-epimerase (NCBI ptt file), at 1,497,645 to 1,498,121 BT1202 BT1203: BT1203 - putative UDP-N-acetylglucosamine 2-epimerase (NCBI ptt file), at 1,498,100 to 1,498,729 BT1203 Position (kb) 1497 1498 1499Strain fitness (log2 ratio) -2 -1 0 1at 1496.668 kb on - strand, within BT1200at 1496.748 kb on + strand, within BT1200at 1496.966 kb on + strandat 1496.970 kb on - strandat 1496.970 kb on - strandat 1497.190 kb on + strand, within BT1201at 1497.193 kb on + strand, within BT1201at 1497.302 kb on - strand, within BT1201at 1497.452 kb on + strand, within BT1201at 1497.565 kb on - strandat 1497.572 kb on - strandat 1497.973 kb on + strand, within BT1202at 1498.064 kb on + strand, within BT1202at 1498.151 kb on + strandat 1498.155 kb on - strandat 1498.216 kb on - strand, within BT1203at 1498.353 kb on + strand, within BT1203at 1498.370 kb on + strand, within BT1203at 1498.371 kb on - strand, within BT1203at 1498.401 kb on + strand, within BT1203at 1498.514 kb on - strand, within BT1203at 1498.986 kb on - strandat 1499.047 kb on - strandat 1499.049 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Galactan from Potato; filtered 2.5 mg/ml (C)
remove
1,496,668 - BT1200 0.47 -0.4
1,496,748 + BT1200 0.64 +0.9
1,496,966 + -2.6
1,496,970 - -0.1
1,496,970 - -2.1
1,497,190 + BT1201 0.41 -1.6
1,497,193 + BT1201 0.41 -1.2
1,497,302 - BT1201 0.59 -0.1
1,497,452 + BT1201 0.82 -0.1
1,497,565 - -0.1
1,497,572 - -0.1
1,497,973 + BT1202 0.69 -0.3
1,498,064 + BT1202 0.88 -0.1
1,498,151 + -0.1
1,498,155 - -0.1
1,498,216 - BT1203 0.18 +0.9
1,498,353 + BT1203 0.40 -1.1
1,498,370 + BT1203 0.43 -1.3
1,498,371 - BT1203 0.43 -1.6
1,498,401 + BT1203 0.48 +0.9
1,498,514 - BT1203 0.66 +0.7
1,498,986 - -1.4
1,499,047 - -0.1
1,499,049 - -0.6

Or see this region's nucleotide sequence