Experiment: Galactan from Potato; filtered 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BT0515 and BT0516 are separated by 153 nucleotides BT0516 and BT0517 are separated by 33 nucleotides BT0517 and BT0518 are separated by 183 nucleotides
BT0515: BT0515 - terminal quinol oxidase, subunit, putative (doxD-like) (NCBI ptt file), at 638,180 to 639,205
BT0515
BT0516: BT0516 - conserved hypothetical protein (NCBI ptt file), at 639,359 to 639,721
BT0516
BT0517: BT0517 - flavodoxin (NCBI ptt file), at 639,755 to 640,261
BT0517
BT0518: BT0518 - Bifunctional purine biosynthesis protein, putative 5-aminoimidazole-4-carboxamide ribonucleotide(AICAR) transformylase/IMP cyclohydrolase (NCBI ptt file), at 640,445 to 641,620
BT0518
Position (kb) 639
640
641 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 638.825 kb on - strand, within BT0515 at 638.882 kb on - strand, within BT0515 at 638.913 kb on + strand, within BT0515 at 638.914 kb on - strand, within BT0515 at 638.914 kb on - strand, within BT0515 at 638.937 kb on - strand, within BT0515 at 638.939 kb on + strand, within BT0515 at 638.940 kb on - strand, within BT0515 at 639.055 kb on - strand, within BT0515 at 639.167 kb on + strand at 639.338 kb on + strand at 639.374 kb on + strand at 639.375 kb on - strand at 639.397 kb on - strand, within BT0516 at 639.397 kb on - strand, within BT0516 at 639.490 kb on + strand, within BT0516 at 639.508 kb on + strand, within BT0516 at 639.509 kb on - strand, within BT0516 at 639.545 kb on - strand, within BT0516 at 639.628 kb on + strand, within BT0516 at 639.629 kb on - strand, within BT0516 at 639.629 kb on - strand, within BT0516 at 639.636 kb on - strand, within BT0516 at 639.667 kb on - strand, within BT0516 at 639.727 kb on - strand at 639.727 kb on - strand at 639.734 kb on + strand at 639.739 kb on + strand at 639.973 kb on + strand, within BT0517 at 639.974 kb on - strand, within BT0517 at 640.014 kb on - strand, within BT0517 at 640.014 kb on - strand, within BT0517 at 640.062 kb on + strand, within BT0517 at 640.184 kb on + strand, within BT0517 at 640.348 kb on - strand at 640.389 kb on + strand at 640.393 kb on + strand at 640.393 kb on + strand at 640.394 kb on - strand at 640.491 kb on + strand at 640.556 kb on + strand at 640.556 kb on + strand at 640.557 kb on - strand at 640.623 kb on - strand, within BT0518 at 640.835 kb on - strand, within BT0518 at 640.971 kb on - strand, within BT0518 at 641.123 kb on + strand, within BT0518 at 641.123 kb on + strand, within BT0518 at 641.123 kb on + strand, within BT0518 at 641.214 kb on - strand, within BT0518 at 641.227 kb on + strand, within BT0518
Per-strain Table
Position Strand Gene LocusTag Fraction Galactan from Potato; filtered 2.5 mg/ml (C) remove 638,825 - BT0515 0.63 -1.8 638,882 - BT0515 0.68 -0.8 638,913 + BT0515 0.71 -1.6 638,914 - BT0515 0.72 -0.6 638,914 - BT0515 0.72 -1.6 638,937 - BT0515 0.74 +0.6 638,939 + BT0515 0.74 -1.3 638,940 - BT0515 0.74 -1.0 639,055 - BT0515 0.85 +1.0 639,167 + -0.0 639,338 + -1.6 639,374 + -0.0 639,375 - -0.0 639,397 - BT0516 0.10 -0.0 639,397 - BT0516 0.10 -3.0 639,490 + BT0516 0.36 -2.6 639,508 + BT0516 0.41 +1.0 639,509 - BT0516 0.41 -1.2 639,545 - BT0516 0.51 -0.0 639,628 + BT0516 0.74 -1.3 639,629 - BT0516 0.74 -0.0 639,629 - BT0516 0.74 -0.6 639,636 - BT0516 0.76 -1.6 639,667 - BT0516 0.85 -1.0 639,727 - -0.0 639,727 - -1.0 639,734 + -0.0 639,739 + -1.8 639,973 + BT0517 0.43 -2.0 639,974 - BT0517 0.43 -1.6 640,014 - BT0517 0.51 -1.0 640,014 - BT0517 0.51 -2.3 640,062 + BT0517 0.61 -1.8 640,184 + BT0517 0.85 -1.6 640,348 - -0.3 640,389 + +1.0 640,393 + -1.4 640,393 + +0.0 640,394 - +0.0 640,491 + +0.0 640,556 + -0.8 640,556 + -0.8 640,557 - -1.0 640,623 - BT0518 0.15 -0.8 640,835 - BT0518 0.33 -1.0 640,971 - BT0518 0.45 -0.4 641,123 + BT0518 0.58 +0.0 641,123 + BT0518 0.58 +0.2 641,123 + BT0518 0.58 +0.0 641,214 - BT0518 0.65 -0.9 641,227 + BT0518 0.66 -2.0
Or see this region's nucleotide sequence