Strain Fitness in Bacteroides thetaiotaomicron VPI-5482 around BT0112

Experiment: Galactan from Potato; filtered 2.5 mg/ml (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBT0110 and BT0111 are separated by 167 nucleotidesBT0111 and BT0112 overlap by 23 nucleotidesBT0112 and BT0113 are separated by 25 nucleotidesBT0113 and BT0114 are separated by 2 nucleotides BT0110: BT0110 - putative regulatory protein (NCBI ptt file), at 102,836 to 103,696 BT0110 BT0111: BT0111 - hypothetical protein (NCBI ptt file), at 103,864 to 104,115 BT0111 BT0112: BT0112 - putative permease (NCBI ptt file), at 104,093 to 104,998 BT0112 BT0113: BT0113 - hypothetical protein (NCBI ptt file), at 105,024 to 105,524 BT0113 BT0114: BT0114 - putative symporter, arsenic resistance membrane protein (NCBI ptt file), at 105,527 to 106,573 BT0114 Position (kb) 104 105Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 103.143 kb on + strand, within BT0110at 103.144 kb on - strand, within BT0110at 103.171 kb on + strand, within BT0110at 103.212 kb on + strand, within BT0110at 103.326 kb on + strand, within BT0110at 103.390 kb on - strand, within BT0110at 103.519 kb on + strand, within BT0110at 103.599 kb on - strand, within BT0110at 103.605 kb on - strand, within BT0110at 103.702 kb on - strandat 103.730 kb on - strandat 103.794 kb on + strandat 103.794 kb on + strandat 103.803 kb on + strandat 103.821 kb on + strandat 103.824 kb on + strandat 103.998 kb on + strand, within BT0111at 104.004 kb on + strand, within BT0111at 104.111 kb on + strandat 104.116 kb on - strandat 104.163 kb on - strandat 104.163 kb on - strandat 104.261 kb on - strand, within BT0112at 104.293 kb on + strand, within BT0112at 104.399 kb on - strand, within BT0112at 104.401 kb on - strand, within BT0112at 104.442 kb on + strand, within BT0112at 104.444 kb on + strand, within BT0112at 104.458 kb on + strand, within BT0112at 104.477 kb on + strand, within BT0112at 104.666 kb on - strand, within BT0112at 104.690 kb on - strand, within BT0112at 104.693 kb on + strand, within BT0112at 104.695 kb on + strand, within BT0112at 104.695 kb on + strand, within BT0112at 104.723 kb on + strand, within BT0112at 104.834 kb on + strand, within BT0112at 104.893 kb on + strand, within BT0112at 104.999 kb on - strandat 105.018 kb on + strandat 105.195 kb on + strand, within BT0113at 105.367 kb on + strand, within BT0113at 105.368 kb on - strand, within BT0113at 105.383 kb on + strand, within BT0113at 105.429 kb on + strand, within BT0113at 105.432 kb on - strand, within BT0113at 105.432 kb on - strand, within BT0113at 105.453 kb on + strand, within BT0113at 105.453 kb on + strand, within BT0113at 105.460 kb on - strand, within BT0113at 105.492 kb on + strandat 105.528 kb on + strandat 105.529 kb on - strandat 105.580 kb on + strandat 105.580 kb on + strandat 105.581 kb on - strandat 105.815 kb on - strand, within BT0114at 105.818 kb on + strand, within BT0114at 105.935 kb on + strand, within BT0114at 105.935 kb on + strand, within BT0114at 105.968 kb on + strand, within BT0114at 105.971 kb on + strand, within BT0114

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Per-strain Table

Position Strand Gene LocusTag Fraction Galactan from Potato; filtered 2.5 mg/ml (C)
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103,143 + BT0110 0.36 -1.7
103,144 - BT0110 0.36 -1.7
103,171 + BT0110 0.39 -0.1
103,212 + BT0110 0.44 -1.7
103,326 + BT0110 0.57 -0.1
103,390 - BT0110 0.64 -1.4
103,519 + BT0110 0.79 -2.1
103,599 - BT0110 0.89 -0.1
103,605 - BT0110 0.89 -0.4
103,702 - -0.7
103,730 - -2.4
103,794 + -2.9
103,794 + -0.7
103,803 + -1.7
103,821 + -2.9
103,824 + -1.1
103,998 + BT0111 0.53 +1.9
104,004 + BT0111 0.56 -1.4
104,111 + -0.1
104,116 - -0.1
104,163 - -1.5
104,163 - -1.9
104,261 - BT0112 0.19 -1.1
104,293 + BT0112 0.22 +0.3
104,399 - BT0112 0.34 -1.1
104,401 - BT0112 0.34 +0.5
104,442 + BT0112 0.39 -1.1
104,444 + BT0112 0.39 -2.4
104,458 + BT0112 0.40 -1.7
104,477 + BT0112 0.42 -0.7
104,666 - BT0112 0.63 -2.7
104,690 - BT0112 0.66 -1.7
104,693 + BT0112 0.66 -1.7
104,695 + BT0112 0.66 -1.7
104,695 + BT0112 0.66 -1.7
104,723 + BT0112 0.70 -2.2
104,834 + BT0112 0.82 -0.1
104,893 + BT0112 0.88 -2.4
104,999 - -0.1
105,018 + -2.5
105,195 + BT0113 0.34 -2.1
105,367 + BT0113 0.68 -0.6
105,368 - BT0113 0.69 -2.1
105,383 + BT0113 0.72 -0.1
105,429 + BT0113 0.81 -1.7
105,432 - BT0113 0.81 -1.0
105,432 - BT0113 0.81 -0.1
105,453 + BT0113 0.86 -1.8
105,453 + BT0113 0.86 -0.1
105,460 - BT0113 0.87 -2.5
105,492 + -0.4
105,528 + -0.1
105,529 - -1.4
105,580 + -0.6
105,580 + -1.0
105,581 - -2.4
105,815 - BT0114 0.28 +0.5
105,818 + BT0114 0.28 -0.6
105,935 + BT0114 0.39 -0.5
105,935 + BT0114 0.39 -1.4
105,968 + BT0114 0.42 -1.1
105,971 + BT0114 0.42 +0.5

Or see this region's nucleotide sequence