Experiment: Galactan from Potato; filtered 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt p5482_05 and p5482_06 are separated by 759 nucleotides p5482_06 and p5482_07 are separated by 4 nucleotides
p5482_05: p5482_05 - putative replication protein B (NCBI), at 2,747 to 3,787
_05
p5482_06: p5482_06 - mobilization protein A (NCBI), at 4,547 to 5,167
_06
p5482_07: p5482_07 - mobilization protein B (NCBI), at 5,172 to 7,421
_07
Position (kb) 4
5
6 Strain fitness (log2 ratio) -2
-1
0
1
2 at 4.214 kb on + strand at 4.315 kb on + strand at 4.443 kb on + strand at 4.444 kb on - strand at 4.448 kb on - strand at 4.448 kb on - strand at 4.498 kb on + strand at 4.520 kb on - strand at 4.542 kb on + strand at 4.546 kb on + strand at 4.561 kb on - strand at 4.561 kb on - strand at 4.585 kb on + strand at 4.585 kb on + strand at 4.585 kb on + strand at 4.591 kb on + strand at 4.603 kb on + strand at 4.624 kb on + strand, within p5482_06 at 4.685 kb on + strand, within p5482_06 at 4.685 kb on + strand, within p5482_06 at 4.686 kb on - strand, within p5482_06 at 4.803 kb on + strand, within p5482_06 at 4.803 kb on + strand, within p5482_06 at 4.803 kb on + strand, within p5482_06 at 4.804 kb on - strand, within p5482_06 at 4.880 kb on + strand, within p5482_06 at 4.880 kb on + strand, within p5482_06 at 4.881 kb on - strand, within p5482_06 at 4.881 kb on - strand, within p5482_06 at 4.881 kb on - strand, within p5482_06 at 4.881 kb on - strand, within p5482_06 at 4.882 kb on + strand, within p5482_06 at 4.882 kb on + strand, within p5482_06 at 4.882 kb on + strand, within p5482_06 at 4.882 kb on + strand, within p5482_06 at 4.883 kb on - strand, within p5482_06 at 4.899 kb on + strand, within p5482_06 at 4.990 kb on - strand, within p5482_06 at 5.030 kb on - strand, within p5482_06 at 5.109 kb on + strand at 5.109 kb on + strand at 5.116 kb on + strand at 5.117 kb on - strand at 5.119 kb on + strand at 5.119 kb on + strand at 5.119 kb on + strand at 5.120 kb on - strand at 5.120 kb on - strand at 5.120 kb on - strand at 5.128 kb on + strand at 5.128 kb on + strand at 5.128 kb on + strand at 5.128 kb on + strand at 5.128 kb on + strand at 5.157 kb on + strand at 5.158 kb on - strand at 5.165 kb on + strand at 5.165 kb on + strand at 5.165 kb on + strand at 5.166 kb on - strand at 5.166 kb on - strand at 5.166 kb on - strand at 5.171 kb on + strand at 5.171 kb on + strand at 5.171 kb on + strand at 5.171 kb on + strand at 5.172 kb on - strand at 5.172 kb on - strand at 5.172 kb on - strand at 5.185 kb on + strand at 5.186 kb on - strand at 5.186 kb on - strand at 5.300 kb on + strand at 5.300 kb on + strand at 5.301 kb on - strand at 5.318 kb on - strand at 5.321 kb on + strand at 5.321 kb on + strand at 5.321 kb on + strand at 5.321 kb on + strand at 5.322 kb on - strand at 5.322 kb on - strand at 5.330 kb on - strand at 5.358 kb on - strand at 5.440 kb on - strand, within p5482_07 at 5.450 kb on + strand, within p5482_07 at 5.450 kb on + strand, within p5482_07 at 5.507 kb on + strand, within p5482_07 at 5.517 kb on + strand, within p5482_07 at 5.517 kb on + strand, within p5482_07 at 5.517 kb on + strand, within p5482_07 at 5.517 kb on + strand, within p5482_07 at 5.518 kb on - strand, within p5482_07 at 5.518 kb on - strand, within p5482_07 at 5.518 kb on - strand, within p5482_07 at 5.518 kb on - strand, within p5482_07 at 5.543 kb on + strand, within p5482_07 at 5.543 kb on + strand, within p5482_07 at 5.543 kb on + strand, within p5482_07 at 5.543 kb on + strand, within p5482_07 at 5.543 kb on + strand, within p5482_07 at 5.568 kb on + strand, within p5482_07 at 5.571 kb on + strand, within p5482_07 at 5.571 kb on + strand, within p5482_07 at 5.571 kb on + strand, within p5482_07 at 5.572 kb on - strand, within p5482_07 at 5.599 kb on - strand, within p5482_07 at 5.599 kb on - strand, within p5482_07 at 5.651 kb on + strand, within p5482_07 at 5.651 kb on + strand, within p5482_07 at 5.651 kb on + strand, within p5482_07 at 5.652 kb on - strand, within p5482_07 at 5.668 kb on + strand, within p5482_07 at 5.668 kb on + strand, within p5482_07 at 5.669 kb on - strand, within p5482_07 at 5.680 kb on + strand, within p5482_07 at 5.681 kb on - strand, within p5482_07 at 5.733 kb on - strand, within p5482_07 at 5.844 kb on + strand, within p5482_07 at 5.844 kb on + strand, within p5482_07 at 5.868 kb on + strand, within p5482_07 at 5.868 kb on + strand, within p5482_07 at 5.868 kb on + strand, within p5482_07 at 5.868 kb on + strand, within p5482_07 at 5.868 kb on + strand, within p5482_07 at 5.868 kb on + strand, within p5482_07 at 5.868 kb on + strand, within p5482_07 at 5.868 kb on + strand, within p5482_07 at 5.868 kb on + strand, within p5482_07 at 5.869 kb on - strand, within p5482_07 at 5.869 kb on - strand, within p5482_07 at 5.869 kb on - strand, within p5482_07 at 5.869 kb on - strand, within p5482_07 at 5.869 kb on - strand, within p5482_07 at 5.869 kb on - strand, within p5482_07 at 5.869 kb on - strand, within p5482_07 at 5.872 kb on + strand, within p5482_07 at 5.872 kb on + strand, within p5482_07 at 5.873 kb on - strand, within p5482_07 at 5.873 kb on - strand, within p5482_07 at 5.873 kb on - strand, within p5482_07 at 5.991 kb on + strand, within p5482_07 at 5.991 kb on + strand, within p5482_07 at 5.992 kb on - strand, within p5482_07 at 5.992 kb on - strand, within p5482_07 at 6.103 kb on + strand, within p5482_07 at 6.104 kb on - strand, within p5482_07 at 6.104 kb on - strand, within p5482_07 at 6.113 kb on - strand, within p5482_07 at 6.138 kb on + strand, within p5482_07 at 6.139 kb on - strand, within p5482_07 at 6.139 kb on - strand, within p5482_07
Per-strain Table
Position Strand Gene LocusTag Fraction Galactan from Potato; filtered 2.5 mg/ml (C) remove 4,214 + +0.6 4,315 + -0.0 4,443 + -0.6 4,444 - -2.5 4,448 - -0.2 4,448 - -0.3 4,498 + -0.2 4,520 - -0.8 4,542 + -2.6 4,546 + -0.3 4,561 - +0.4 4,561 - -0.2 4,585 + -1.6 4,585 + -0.3 4,585 + +0.0 4,591 + -0.0 4,603 + -1.0 4,624 + p5482_06 0.12 +1.0 4,685 + p5482_06 0.22 +1.0 4,685 + p5482_06 0.22 -0.1 4,686 - p5482_06 0.22 -0.9 4,803 + p5482_06 0.41 -1.4 4,803 + p5482_06 0.41 -1.7 4,803 + p5482_06 0.41 +0.1 4,804 - p5482_06 0.41 -0.8 4,880 + p5482_06 0.54 -0.4 4,880 + p5482_06 0.54 -0.7 4,881 - p5482_06 0.54 -0.8 4,881 - p5482_06 0.54 +0.4 4,881 - p5482_06 0.54 -0.2 4,881 - p5482_06 0.54 -1.0 4,882 + p5482_06 0.54 -1.1 4,882 + p5482_06 0.54 -0.5 4,882 + p5482_06 0.54 -0.4 4,882 + p5482_06 0.54 +0.4 4,883 - p5482_06 0.54 +0.1 4,899 + p5482_06 0.57 -0.5 4,990 - p5482_06 0.71 -0.7 5,030 - p5482_06 0.78 -1.0 5,109 + -0.7 5,109 + -0.6 5,116 + +0.6 5,117 - -0.8 5,119 + -0.1 5,119 + -0.2 5,119 + -0.0 5,120 - +0.3 5,120 - -0.6 5,120 - -0.5 5,128 + -0.0 5,128 + -0.1 5,128 + +1.0 5,128 + -1.2 5,128 + +0.8 5,157 + -0.8 5,158 - -0.6 5,165 + -1.0 5,165 + -0.4 5,165 + -1.0 5,166 - -1.0 5,166 - +1.6 5,166 - +0.8 5,171 + -0.0 5,171 + -0.8 5,171 + +0.2 5,171 + +0.2 5,172 - -0.4 5,172 - -0.4 5,172 - -0.3 5,185 + -0.7 5,186 - -0.6 5,186 - -1.1 5,300 + -0.7 5,300 + -0.9 5,301 - -0.4 5,318 - -0.0 5,321 + -1.0 5,321 + +1.6 5,321 + +0.2 5,321 + +0.7 5,322 - -0.1 5,322 - +0.4 5,330 - +0.3 5,358 - +0.2 5,440 - p5482_07 0.12 -0.2 5,450 + p5482_07 0.12 -0.4 5,450 + p5482_07 0.12 -0.2 5,507 + p5482_07 0.15 -0.4 5,517 + p5482_07 0.15 -1.3 5,517 + p5482_07 0.15 -0.0 5,517 + p5482_07 0.15 -0.7 5,517 + p5482_07 0.15 -0.0 5,518 - p5482_07 0.15 -0.3 5,518 - p5482_07 0.15 -1.2 5,518 - p5482_07 0.15 -0.0 5,518 - p5482_07 0.15 -0.0 5,543 + p5482_07 0.16 -0.3 5,543 + p5482_07 0.16 +2.2 5,543 + p5482_07 0.16 +0.5 5,543 + p5482_07 0.16 -0.5 5,543 + p5482_07 0.16 +0.2 5,568 + p5482_07 0.18 -0.0 5,571 + p5482_07 0.18 -1.0 5,571 + p5482_07 0.18 -0.4 5,571 + p5482_07 0.18 -0.0 5,572 - p5482_07 0.18 -0.2 5,599 - p5482_07 0.19 -0.5 5,599 - p5482_07 0.19 +0.8 5,651 + p5482_07 0.21 +0.2 5,651 + p5482_07 0.21 -0.3 5,651 + p5482_07 0.21 +0.2 5,652 - p5482_07 0.21 +0.1 5,668 + p5482_07 0.22 -0.4 5,668 + p5482_07 0.22 -0.6 5,669 - p5482_07 0.22 -0.0 5,680 + p5482_07 0.23 -0.5 5,681 - p5482_07 0.23 +0.1 5,733 - p5482_07 0.25 -0.1 5,844 + p5482_07 0.30 -0.5 5,844 + p5482_07 0.30 -0.1 5,868 + p5482_07 0.31 -0.4 5,868 + p5482_07 0.31 -0.3 5,868 + p5482_07 0.31 +1.0 5,868 + p5482_07 0.31 -1.0 5,868 + p5482_07 0.31 -0.6 5,868 + p5482_07 0.31 -1.6 5,868 + p5482_07 0.31 -0.0 5,868 + p5482_07 0.31 -0.3 5,868 + p5482_07 0.31 -0.0 5,869 - p5482_07 0.31 -0.8 5,869 - p5482_07 0.31 +0.2 5,869 - p5482_07 0.31 -0.0 5,869 - p5482_07 0.31 -1.0 5,869 - p5482_07 0.31 +0.2 5,869 - p5482_07 0.31 -0.6 5,869 - p5482_07 0.31 +1.0 5,872 + p5482_07 0.31 -1.4 5,872 + p5482_07 0.31 +0.6 5,873 - p5482_07 0.31 -1.0 5,873 - p5482_07 0.31 -0.4 5,873 - p5482_07 0.31 -1.0 5,991 + p5482_07 0.36 +1.0 5,991 + p5482_07 0.36 -0.8 5,992 - p5482_07 0.36 -0.4 5,992 - p5482_07 0.36 -0.0 6,103 + p5482_07 0.41 -2.3 6,104 - p5482_07 0.41 -1.4 6,104 - p5482_07 0.41 -0.0 6,113 - p5482_07 0.42 -0.3 6,138 + p5482_07 0.43 -0.0 6,139 - p5482_07 0.43 -0.3 6,139 - p5482_07 0.43 -0.0
Or see this region's nucleotide sequence