Strain Fitness in Bacteroides thetaiotaomicron VPI-5482 around BT1656

Experiment: Galactan from Potato; autoclaved 2.5 mg/ml (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBT1654 and BT1655 are separated by 59 nucleotidesBT1655 and BT1656 are separated by 10 nucleotidesBT1656 and BT1657 are separated by 335 nucleotides BT1654: BT1654 - polysialic acid transport protein kpsD precursor (NCBI ptt file), at 2,044,605 to 2,046,974 BT1654 BT1655: BT1655 - conserved hypothetical protein (NCBI ptt file), at 2,047,034 to 2,047,402 BT1655 BT1656: BT1656 - putative transcriptional regulator (NCBI ptt file), at 2,047,413 to 2,047,991 BT1656 BT1657: BT1657 - integrase (NCBI ptt file), at 2,048,327 to 2,049,277 BT1657 Position (kb) 2047 2048Strain fitness (log2 ratio) -2 -1 0 1at 2046.735 kb on - strand, within BT1654at 2047.499 kb on + strand, within BT1656at 2047.766 kb on + strand, within BT1656at 2047.766 kb on + strand, within BT1656at 2048.094 kb on + strandat 2048.156 kb on - strandat 2048.172 kb on + strandat 2048.970 kb on + strand, within BT1657

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Per-strain Table

Position Strand Gene LocusTag Fraction Galactan from Potato; autoclaved 2.5 mg/ml (C)
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2,046,735 - BT1654 0.90 -0.7
2,047,499 + BT1656 0.15 -1.7
2,047,766 + BT1656 0.61 -0.1
2,047,766 + BT1656 0.61 +0.3
2,048,094 + -1.4
2,048,156 - +0.4
2,048,172 + -0.7
2,048,970 + BT1657 0.68 -1.9

Or see this region's nucleotide sequence