Strain Fitness in Bacteroides thetaiotaomicron VPI-5482 around BT3181

Experiment: D-Glucose 5 mg/ml (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	D-Glucose 5 mg/ml (C)
4,068,901	+		BT3180	0.22	-0.7
4,068,909	+		BT3180	0.23	-1.2
4,069,020	+		BT3180	0.33	-1.4
4,069,024	+		BT3180	0.33	-1.0
4,069,025	-		BT3180	0.33	-0.1
4,069,025	-		BT3180	0.33	-0.6
4,069,051	-		BT3180	0.36	-1.3
4,069,125	-		BT3180	0.42	-0.6
4,069,139	+		BT3180	0.43	+1.5
4,069,139	+		BT3180	0.43	-0.6
4,069,141	+		BT3180	0.44	-2.4
4,069,141	+		BT3180	0.44	-2.2
4,069,142	-		BT3180	0.44	-0.8
4,069,218	-		BT3180	0.50	-1.1
4,069,218	-		BT3180	0.50	-2.1
4,069,277	-		BT3180	0.56	-1.4
4,069,279	+		BT3180	0.56	-1.8
4,069,280	-		BT3180	0.56	-1.9
4,069,285	+		BT3180	0.56	-1.0
4,069,286	-		BT3180	0.56	-0.5
4,069,286	-		BT3180	0.56	-0.7
4,069,296	-		BT3180	0.57	-0.6
4,069,490	+		BT3180	0.74	-1.0
4,069,491	-		BT3180	0.74	-1.4
4,069,491	-		BT3180	0.74	-0.1
4,069,491	-		BT3180	0.74	-1.0
4,069,491	-		BT3180	0.74	-0.5
4,069,494	-		BT3180	0.75	-1.1
4,069,505	-		BT3180	0.76	-0.1
4,069,526	+		BT3180	0.78	-2.6
4,069,527	-		BT3180	0.78	-0.6
4,069,590	+		BT3180	0.83	-0.1
4,069,591	-		BT3180	0.83	-0.1
4,069,609	+		BT3180	0.85	-1.2
4,069,660	+		BT3180	0.89	-1.1
4,069,675	+				-1.1
4,069,675	+				-1.1
4,069,687	+				-1.1
4,069,714	-				-1.4
4,069,750	+				-0.1
4,069,751	-				+1.5
4,069,751	-				-0.6
4,069,753	-				-0.1
4,069,788	+				-1.6
4,069,843	+				-2.1
4,069,844	-				-0.5
4,069,908	+				-0.6
4,069,976	+				-2.1
4,069,976	+				-2.2
4,069,976	+				-1.6
4,069,977	-				-0.6
4,069,980	+				-1.2
4,069,980	+				-2.6
4,069,981	-				-1.6
4,070,050	-		BT3181	0.10	-0.1
4,070,050	-		BT3181	0.10	-2.4
4,070,061	-		BT3181	0.11	-0.1
4,070,170	+		BT3181	0.18	-1.9
4,070,171	-		BT3181	0.18	-1.6
4,070,188	+		BT3181	0.19	-1.8
4,070,249	+		BT3181	0.22	-1.6
4,070,337	+		BT3181	0.28	-1.1
4,070,501	+		BT3181	0.37	-1.7
4,070,504	-		BT3181	0.37	-1.9
4,070,559	-		BT3181	0.41	-2.2
4,070,580	-		BT3181	0.42	-0.6
4,070,580	-		BT3181	0.42	-2.5
4,070,595	-		BT3181	0.43	-2.5
4,070,615	+		BT3181	0.44	-2.1
4,070,616	-		BT3181	0.44	-1.1
4,070,616	-		BT3181	0.44	+0.9
4,070,658	-		BT3181	0.47	-0.1
4,070,769	-		BT3181	0.53	-1.9
4,070,769	-		BT3181	0.53	-1.4
4,070,774	+		BT3181	0.54	-2.1
4,070,775	-		BT3181	0.54	+0.1
4,070,847	-		BT3181	0.58	-0.9
4,070,893	+		BT3181	0.61	-3.1
4,070,894	-		BT3181	0.61	-1.6
4,070,894	-		BT3181	0.61	-1.6
4,070,930	+		BT3181	0.63	-1.6
4,070,931	-		BT3181	0.63	-1.6
4,071,006	+		BT3181	0.67	-1.1
4,071,006	+		BT3181	0.67	-1.1
4,071,007	-		BT3181	0.67	-1.6
4,071,014	+		BT3181	0.68	-0.1
4,071,050	-		BT3181	0.70	-1.1
4,071,050	-		BT3181	0.70	-1.5
4,071,050	-		BT3181	0.70	-0.1
4,071,220	-		BT3181	0.80	-2.0
4,071,225	+		BT3181	0.80	-1.4
4,071,225	+		BT3181	0.80	-0.8
4,071,225	+		BT3181	0.80	-1.4
4,071,228	-		BT3181	0.81	-1.1
4,071,228	-		BT3181	0.81	-2.1
4,071,245	+		BT3181	0.82	-1.6
4,071,295	+		BT3181	0.85	-1.1
4,071,378	-		BT3181	0.89	-0.1
4,071,378	-		BT3181	0.89	-2.5
4,071,380	+		BT3181	0.90	-0.1
4,071,389	+				-1.1
4,071,389	+				-1.1
4,071,392	+				-1.1
4,071,393	-				-0.5
4,071,450	+				-2.6
4,071,547	-				+0.9
4,071,566	-				-1.9
4,071,573	-				-0.8
4,071,575	-				-1.1
4,071,594	+				-1.5
4,071,627	+				-1.3
4,071,637	+				-1.3
4,071,713	-				-0.1
4,071,730	+				-1.6
4,071,744	-				-0.4
4,071,747	+				-1.1
4,071,773	-				+1.3
4,071,786	-				+0.5
4,071,786	-				-1.6
4,071,792	+				+0.7
4,071,798	+				-1.1
4,071,804	+				-1.4
4,071,813	+				-0.1
4,071,814	-				-1.9
4,071,870	+		BT3182	0.12	-0.1
4,071,870	+		BT3182	0.12	-2.0
4,071,870	+		BT3182	0.12	-1.9
4,071,871	-		BT3182	0.12	-2.2
4,071,871	-		BT3182	0.12	-0.1
4,072,002	+		BT3182	0.35	-0.1
4,072,002	+		BT3182	0.35	+1.5
4,072,002	+		BT3182	0.35	-1.5
4,072,002	+		BT3182	0.35	-2.3
4,072,003	-		BT3182	0.35	-1.6
4,072,003	-		BT3182	0.35	-0.1
4,072,007	+		BT3182	0.36	-0.8
4,072,014	+		BT3182	0.37	-0.1
4,072,044	+		BT3182	0.42	-0.5
4,072,044	+		BT3182	0.42	-1.9
4,072,047	+		BT3182	0.43	+0.9
4,072,048	-		BT3182	0.43	-1.1
4,072,048	-		BT3182	0.43	-1.1
4,072,158	+		BT3182	0.62	-0.8
4,072,162	+		BT3182	0.63	-0.1
4,072,241	+		BT3182	0.76	-1.3
4,072,241	+		BT3182	0.76	+0.9
4,072,241	+		BT3182	0.76	-1.7
4,072,289	-		BT3182	0.85	-1.1
4,072,291	-		BT3182	0.85	-1.3
4,072,349	-				-0.5
4,072,375	+				-0.1
4,072,376	-				-0.3
4,072,381	+				-0.7
4,072,382	-				-0.2
4,072,382	-				-1.8
4,072,395	+				-0.5
4,072,396	-				-1.6
4,072,402	+				-1.1
4,072,420	-				-1.1
4,072,420	-				-1.3
4,072,470	+				-2.6
4,072,471	-				-1.1
4,072,471	-				-1.6
4,072,506	+		BT3183	0.17	-0.6
4,072,521	+		BT3183	0.23	-2.1
4,072,522	-		BT3183	0.23	-1.2
4,072,550	+		BT3183	0.33	-1.2
4,072,550	+		BT3183	0.33	+0.8
4,072,551	-		BT3183	0.34	-1.6
4,072,551	-		BT3183	0.34	-0.6