Strain Fitness in Bacteroides thetaiotaomicron VPI-5482 around BT3987

Experiment: D-Glucose 5 mg/ml (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	D-Glucose 5 mg/ml (C)
5,191,940	-		BT3986	0.16	-0.7
5,191,940	-		BT3986	0.16	-1.6
5,192,006	+		BT3986	0.22	-0.8
5,192,006	+		BT3986	0.22	-1.9
5,192,095	+		BT3986	0.30	-1.6
5,192,096	-		BT3986	0.30	-0.4
5,192,163	+		BT3986	0.36	-2.8
5,192,164	-		BT3986	0.36	+0.0
5,192,203	-		BT3986	0.39	-1.3
5,192,226	-		BT3986	0.41	+1.0
5,192,233	-		BT3986	0.42	+1.6
5,192,251	+		BT3986	0.43	-2.0
5,192,255	-		BT3986	0.44	-1.0
5,192,255	-		BT3986	0.44	-1.0
5,192,315	-		BT3986	0.49	-1.0
5,192,463	+		BT3986	0.62	-0.8
5,192,464	-		BT3986	0.62	-2.3
5,192,512	-		BT3986	0.66	-1.6
5,192,552	-		BT3986	0.69	-1.0
5,192,552	-		BT3986	0.69	-0.7
5,192,578	+		BT3986	0.72	-2.0
5,192,597	+		BT3986	0.73	+0.0
5,192,600	-		BT3986	0.74	-2.6
5,192,620	+		BT3986	0.75	-1.0
5,192,621	-		BT3986	0.75	+1.3
5,192,645	+		BT3986	0.77	-1.8
5,192,647	+		BT3986	0.78	+1.0
5,192,758	-		BT3986	0.87	-1.9
5,192,787	-		BT3986	0.90	-1.0
5,192,842	+				-1.4
5,192,849	-				+0.0
5,192,849	-				+0.6
5,192,870	-				-1.0
5,192,894	-				-1.0
5,192,924	-				-1.0
5,192,945	-				-0.6
5,192,945	-				-2.3
5,192,945	-				+2.0
5,192,951	+				-0.4
5,192,954	-				+0.0
5,193,040	+				-1.4
5,193,069	-				-0.8
5,193,077	-				-1.0
5,193,143	+		BT3987	0.14	-1.4
5,193,149	-		BT3987	0.15	-0.2
5,193,149	-		BT3987	0.15	-1.9
5,193,182	-		BT3987	0.17	-1.6
5,193,190	+		BT3987	0.18	-1.0
5,193,191	-		BT3987	0.18	+0.0
5,193,233	+		BT3987	0.21	-1.8
5,193,236	-		BT3987	0.21	-1.0
5,193,247	+		BT3987	0.22	+1.0
5,193,248	-		BT3987	0.22	-2.1
5,193,307	+		BT3987	0.26	-1.4
5,193,307	+		BT3987	0.26	-2.0
5,193,307	+		BT3987	0.26	+0.0
5,193,322	+		BT3987	0.27	+1.0
5,193,350	-		BT3987	0.29	-1.4
5,193,350	-		BT3987	0.29	-1.6
5,193,386	+		BT3987	0.31	-1.6
5,193,386	+		BT3987	0.31	-1.6
5,193,387	-		BT3987	0.31	-0.4
5,193,387	-		BT3987	0.31	-1.6
5,193,392	-		BT3987	0.32	-1.2
5,193,392	-		BT3987	0.32	+0.0
5,193,403	+		BT3987	0.32	-1.3
5,193,403	+		BT3987	0.32	-1.6
5,193,418	+				-0.6
5,193,425	-		BT3987	0.34	+0.4
5,193,425	-		BT3987	0.34	+0.0
5,193,430	+		BT3987	0.34	-1.3
5,193,457	+		BT3987	0.36	+0.0
5,193,457	+		BT3987	0.36	-0.6
5,193,458	-		BT3987	0.36	-1.0
5,193,461	+		BT3987	0.36	-1.0
5,193,476	-		BT3987	0.38	-1.6
5,193,497	+		BT3987	0.39	+0.6
5,193,499	+		BT3987	0.39	+0.8
5,193,513	+		BT3987	0.40	-1.0
5,193,524	+		BT3987	0.41	-0.3
5,193,550	-		BT3987	0.43	-1.0
5,193,562	+		BT3987	0.44	-1.0
5,193,579	+		BT3987	0.45	-2.6
5,193,613	-		BT3987	0.47	-1.0
5,193,635	+		BT3987	0.49	-0.9
5,193,671	-		BT3987	0.51	+0.0
5,193,686	+		BT3987	0.52	-2.0
5,193,687	-		BT3987	0.52	+0.0
5,193,836	+		BT3987	0.63	+0.5
5,193,841	+		BT3987	0.63	-0.5
5,193,842	-		BT3987	0.63	-1.6
5,193,851	+		BT3987	0.64	-2.0
5,193,864	+		BT3987	0.65	-1.6
5,193,988	+		BT3987	0.73	-1.6
5,193,994	-		BT3987	0.74	-2.0
5,194,014	-		BT3987	0.75	-1.8
5,194,020	+		BT3987	0.76	-1.0
5,194,020	+		BT3987	0.76	-1.0
5,194,057	-		BT3987	0.78	-1.6
5,194,060	+		BT3987	0.78	-2.1
5,194,060	+		BT3987	0.78	-1.0
5,194,061	-		BT3987	0.78	-2.0
5,194,061	-				-0.4
5,194,096	+		BT3987	0.81	-3.0
5,194,167	+		BT3987	0.86	-0.3
5,194,168	-		BT3987	0.86	-2.8
5,194,194	+		BT3987	0.88	-0.8
5,194,244	+				-1.6
5,194,244	+				-2.1
5,194,245	-				-1.6
5,194,303	-				+0.0
5,194,303	-				-1.0
5,194,315	+				-1.6
5,194,318	-				+0.0
5,194,349	-				-1.5
5,194,367	+				-2.0
5,194,368	-				-1.2
5,194,413	-				-0.6
5,194,413	-				-1.6
5,194,414	+				-0.7
5,194,415	-				-1.4
5,194,617	-		BT3988	0.16	-1.0
5,194,619	-		BT3988	0.16	+0.3
5,194,619	-		BT3988	0.16	+0.0
5,194,671	+		BT3988	0.20	-1.0
5,194,671	+		BT3988	0.20	+0.0
5,194,672	-		BT3988	0.20	+0.0
5,194,679	-		BT3988	0.21	+0.3
5,194,810	+		BT3988	0.31	-1.0
5,194,850	-		BT3988	0.34	-0.3
5,194,850	-		BT3988	0.34	+0.0
5,194,850	-		BT3988	0.34	-1.6
5,194,850	-		BT3988	0.34	+0.0
5,194,870	-		BT3988	0.35	-1.5
5,194,884	+		BT3988	0.36	-0.6
5,194,901	+		BT3988	0.38	-1.6
5,194,937	-		BT3988	0.40	-2.6
5,194,980	+		BT3988	0.43	-1.0
5,194,994	-		BT3988	0.44	+0.6
5,194,994	-		BT3988	0.44	+1.0
5,195,001	-		BT3988	0.45	-1.0
5,195,001	-		BT3988	0.45	+0.0
5,195,023	+		BT3988	0.47	-1.0
5,195,044	-		BT3988	0.48	-0.2
5,195,092	+		BT3988	0.52	-1.1
5,195,121	+		BT3988	0.54	-0.6
5,195,121	+		BT3988	0.54	+0.3
5,195,137	-		BT3988	0.55	-1.7
5,195,153	-		BT3988	0.56	-0.3
5,195,161	+		BT3988	0.57	-0.4
5,195,299	-		BT3988	0.67	-1.6
5,195,327	-		BT3988	0.69	-2.6
5,195,328	+		BT3988	0.70	+0.0
5,195,328	+		BT3988	0.70	-1.8
5,195,329	-		BT3988	0.70	-0.7
5,195,335	+		BT3988	0.70	+0.0
5,195,335	+		BT3988	0.70	+0.6
5,195,336	-		BT3988	0.70	-1.1