Strain Fitness in Bacteroides thetaiotaomicron VPI-5482 around BT3716

Experiment: Red Arabinan from sugar-beet; filtered 2.5 mg/ml (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Red Arabinan from sugar-beet; filtered 2.5 mg/ml (C)
4,825,436	+				-0.0
4,825,465	+				-0.9
4,825,466	-				-1.8
4,825,470	-				+0.3
4,825,527	+		BT3715	0.11	-0.9
4,825,527	+		BT3715	0.11	-0.5
4,825,528	-		BT3715	0.11	-1.6
4,825,530	+		BT3715	0.11	-0.4
4,825,530	+		BT3715	0.11	-1.4
4,825,530	+		BT3715	0.11	-0.3
4,825,531	-		BT3715	0.11	-0.0
4,825,531	-		BT3715	0.11	-0.9
4,825,685	+		BT3715	0.33	-1.5
4,825,690	-		BT3715	0.34	-2.6
4,825,723	+		BT3715	0.38	-1.3
4,825,723	+		BT3715	0.38	-1.1
4,825,724	-		BT3715	0.39	-2.4
4,825,798	-		BT3715	0.49	-1.6
4,825,872	-		BT3715	0.59	-2.7
4,825,878	-		BT3715	0.60	-1.8
4,825,902	-		BT3715	0.63	-0.4
4,825,906	+		BT3715	0.64	-1.0
4,825,918	+		BT3715	0.66	-1.0
4,825,918	+		BT3715	0.66	-0.5
4,826,004	+		BT3715	0.78	-0.0
4,826,005	-		BT3715	0.78	-2.3
4,826,065	+		BT3715	0.86	-1.0
4,826,076	+		BT3715	0.88	-0.5
4,826,108	-				-2.4
4,826,108	-				-2.4
4,826,164	+				-2.0
4,826,168	-				-1.0
4,826,172	+				-0.0
4,826,172	+				-0.6
4,826,172	+				-1.4
4,826,172	+				-1.9
4,826,173	-				-0.9
4,826,173	-				-3.0
4,826,173	-				-1.0
4,826,272	-		BT3716	0.24	+1.0
4,826,326	+		BT3716	0.38	-0.0
4,826,327	-		BT3716	0.38	-3.5
4,826,327	-		BT3716	0.38	-2.0
4,826,353	+		BT3716	0.45	-3.7
4,826,354	-		BT3716	0.45	-2.4
4,826,371	+		BT3716	0.49	+0.5
4,826,444	+		BT3716	0.68	-0.9
4,826,488	+		BT3716	0.79	-2.4
4,826,504	-		BT3716	0.83	-2.0
4,826,559	+				-1.5
4,826,564	+				-1.7
4,826,565	-				+0.5
4,826,567	+				-2.8
4,826,567	+				-0.0
4,826,598	+				-1.2
4,826,599	-				-1.4
4,826,604	-				+1.5
4,826,609	-				-0.3
4,826,609	-				-2.0
4,826,653	-				-2.0
4,826,660	+				-2.9
4,826,663	+				+1.0
4,826,666	-				-2.0
4,826,666	-				-1.4
4,826,666	-				-0.9
4,826,728	+				-1.2
4,826,729	-				-2.5
4,826,732	+				-3.2
4,826,773	-				-1.8
4,826,818	-				-0.8
4,826,960	-		BT3717	0.15	-2.4
4,827,026	+		BT3717	0.22	-2.6
4,827,027	-		BT3717	0.22	-2.0
4,827,051	+		BT3717	0.25	-5.7
4,827,072	+		BT3717	0.27	-1.6
4,827,074	+		BT3717	0.27	-3.0
4,827,116	+		BT3717	0.31	-2.0
4,827,292	-		BT3717	0.50	-2.6
4,827,308	+		BT3717	0.51	-3.6
4,827,398	-		BT3717	0.61	-2.6
4,827,447	-		BT3717	0.66	-1.0
4,827,466	-		BT3717	0.68	-0.0