Experiment: Red Arabinan from sugar-beet; filtered 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BT0643 and BT0644 are separated by 253 nucleotides BT0644 and BT0645 are separated by 258 nucleotides BT0645 and BT0646 are separated by 189 nucleotides
BT0643: BT0643 - RNA methyltransferase (NCBI ptt file), at 791,691 to 793,055
BT0643
BT0644: BT0644 - pyruvate phosphate dikinase (NCBI ptt file), at 793,309 to 796,029
BT0644
BT0645: BT0645 - conserved hypothetical protein (NCBI ptt file), at 796,288 to 796,803
BT0645
BT0646: BT0646 - hypothetical protein (NCBI ptt file), at 796,993 to 797,565
BT0646
Position (kb) 793
794
795
796
797 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 792.317 kb on + strand, within BT0643 at 792.320 kb on + strand, within BT0643 at 792.325 kb on + strand, within BT0643 at 792.325 kb on + strand, within BT0643 at 792.384 kb on + strand, within BT0643 at 792.508 kb on + strand, within BT0643 at 792.548 kb on + strand, within BT0643 at 792.721 kb on + strand, within BT0643 at 793.068 kb on + strand at 793.130 kb on + strand at 793.261 kb on - strand at 793.286 kb on - strand at 793.297 kb on - strand at 793.471 kb on + strand at 793.471 kb on + strand at 793.476 kb on + strand at 793.477 kb on - strand at 793.477 kb on - strand at 793.491 kb on + strand at 793.641 kb on + strand, within BT0644 at 793.724 kb on - strand, within BT0644 at 793.744 kb on + strand, within BT0644 at 793.962 kb on + strand, within BT0644 at 793.963 kb on - strand, within BT0644 at 793.974 kb on - strand, within BT0644 at 794.026 kb on - strand, within BT0644 at 794.052 kb on - strand, within BT0644 at 794.064 kb on + strand, within BT0644 at 794.187 kb on - strand, within BT0644 at 794.365 kb on - strand, within BT0644 at 794.633 kb on + strand, within BT0644 at 794.691 kb on - strand, within BT0644 at 794.691 kb on - strand, within BT0644 at 794.694 kb on + strand, within BT0644 at 794.813 kb on + strand, within BT0644 at 794.836 kb on - strand, within BT0644 at 794.843 kb on - strand at 794.844 kb on + strand, within BT0644 at 794.844 kb on + strand, within BT0644 at 794.914 kb on - strand, within BT0644 at 794.926 kb on + strand, within BT0644 at 794.926 kb on + strand, within BT0644 at 794.927 kb on - strand, within BT0644 at 794.928 kb on + strand, within BT0644 at 794.935 kb on - strand, within BT0644 at 795.001 kb on + strand, within BT0644 at 795.021 kb on + strand, within BT0644 at 795.021 kb on + strand, within BT0644 at 795.075 kb on - strand, within BT0644 at 795.102 kb on + strand, within BT0644 at 795.216 kb on + strand, within BT0644 at 795.228 kb on + strand, within BT0644 at 795.301 kb on - strand, within BT0644 at 795.327 kb on + strand, within BT0644 at 795.327 kb on + strand, within BT0644 at 795.350 kb on - strand, within BT0644 at 795.352 kb on - strand, within BT0644 at 795.423 kb on + strand, within BT0644 at 795.424 kb on - strand, within BT0644 at 795.539 kb on + strand, within BT0644 at 795.541 kb on + strand, within BT0644 at 795.847 kb on - strand at 795.895 kb on - strand at 795.947 kb on + strand at 796.028 kb on - strand at 796.129 kb on - strand at 796.129 kb on - strand at 796.227 kb on - strand at 796.263 kb on - strand at 796.301 kb on + strand at 796.354 kb on + strand, within BT0645 at 796.354 kb on + strand, within BT0645 at 796.383 kb on + strand, within BT0645 at 796.384 kb on - strand, within BT0645 at 796.410 kb on + strand, within BT0645 at 796.486 kb on + strand, within BT0645 at 796.487 kb on - strand, within BT0645 at 796.529 kb on - strand, within BT0645 at 796.544 kb on - strand, within BT0645 at 796.546 kb on + strand, within BT0645 at 796.562 kb on + strand, within BT0645 at 796.562 kb on + strand, within BT0645 at 796.562 kb on + strand, within BT0645 at 796.563 kb on - strand, within BT0645 at 796.590 kb on + strand, within BT0645 at 796.620 kb on + strand, within BT0645 at 796.620 kb on + strand, within BT0645 at 796.699 kb on + strand, within BT0645 at 796.917 kb on - strand at 796.920 kb on + strand at 797.010 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Red Arabinan from sugar-beet; filtered 2.5 mg/ml (C) remove 792,317 + BT0643 0.46 -1.6 792,320 + BT0643 0.46 -2.4 792,325 + BT0643 0.46 -1.5 792,325 + BT0643 0.46 -0.5 792,384 + BT0643 0.51 -0.5 792,508 + BT0643 0.60 -0.9 792,548 + BT0643 0.63 -0.9 792,721 + BT0643 0.75 -0.9 793,068 + -1.9 793,130 + -0.9 793,261 - -2.7 793,286 - -2.3 793,297 - -0.4 793,471 + -1.5 793,471 + -1.9 793,476 + -0.9 793,477 - +0.1 793,477 - -0.9 793,491 + -0.9 793,641 + BT0644 0.12 +0.1 793,724 - BT0644 0.15 -1.9 793,744 + BT0644 0.16 -0.9 793,962 + BT0644 0.24 -0.9 793,963 - BT0644 0.24 -1.9 793,974 - BT0644 0.24 +0.1 794,026 - BT0644 0.26 -2.7 794,052 - BT0644 0.27 -1.2 794,064 + BT0644 0.28 -0.9 794,187 - BT0644 0.32 -1.5 794,365 - BT0644 0.39 -0.9 794,633 + BT0644 0.49 -0.5 794,691 - BT0644 0.51 +0.1 794,691 - BT0644 0.51 +0.1 794,694 + BT0644 0.51 -2.4 794,813 + BT0644 0.55 -2.3 794,836 - BT0644 0.56 -0.7 794,843 - -0.9 794,844 + BT0644 0.56 -1.2 794,844 + BT0644 0.56 -2.3 794,914 - BT0644 0.59 -1.5 794,926 + BT0644 0.59 -2.1 794,926 + BT0644 0.59 -0.5 794,927 - BT0644 0.59 -0.9 794,928 + BT0644 0.60 -1.5 794,935 - BT0644 0.60 +0.1 795,001 + BT0644 0.62 -1.9 795,021 + BT0644 0.63 -1.7 795,021 + BT0644 0.63 -2.4 795,075 - BT0644 0.65 -2.7 795,102 + BT0644 0.66 -1.9 795,216 + BT0644 0.70 -1.9 795,228 + BT0644 0.71 -2.7 795,301 - BT0644 0.73 -0.9 795,327 + BT0644 0.74 +0.1 795,327 + BT0644 0.74 +1.1 795,350 - BT0644 0.75 -0.9 795,352 - BT0644 0.75 -1.3 795,423 + BT0644 0.78 -0.9 795,424 - BT0644 0.78 -2.7 795,539 + BT0644 0.82 -2.3 795,541 + BT0644 0.82 -2.0 795,847 - -0.9 795,895 - -0.9 795,947 + -2.9 796,028 - -3.9 796,129 - +0.1 796,129 - +2.4 796,227 - +1.1 796,263 - +0.1 796,301 + -0.4 796,354 + BT0645 0.13 -2.2 796,354 + BT0645 0.13 +0.1 796,383 + BT0645 0.18 +0.1 796,384 - BT0645 0.19 +1.1 796,410 + BT0645 0.24 +0.1 796,486 + BT0645 0.38 -0.9 796,487 - BT0645 0.39 -0.9 796,529 - BT0645 0.47 -1.3 796,544 - BT0645 0.50 -1.9 796,546 + BT0645 0.50 -0.5 796,562 + BT0645 0.53 -1.5 796,562 + BT0645 0.53 -1.9 796,562 + BT0645 0.53 -1.4 796,563 - BT0645 0.53 -0.9 796,590 + BT0645 0.59 -0.9 796,620 + BT0645 0.64 -1.9 796,620 + BT0645 0.64 +0.1 796,699 + BT0645 0.80 -0.9 796,917 - -1.1 796,920 + -0.9 797,010 - -1.0
Or see this region's nucleotide sequence