Experiment: Red Arabinan from sugar-beet; filtered 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BT0362 and BT0363 are separated by 4 nucleotides BT0363 and BT0364 are separated by 12 nucleotides
BT0362: BT0362 - putative outer membrane protein, probably involved in nutrient binding (NCBI ptt file), at 435,803 to 438,952
BT0362
BT0363: BT0363 - putative outer membrane protein (NCBI ptt file), at 438,957 to 440,732
BT0363
BT0364: BT0364 - putative outer membrane protein, probably involved in nutrient binding (NCBI ptt file), at 440,745 to 443,828
BT0364
Position (kb) 438
439
440
441 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 438.135 kb on + strand, within BT0362 at 438.135 kb on + strand, within BT0362 at 438.142 kb on - strand, within BT0362 at 438.209 kb on - strand, within BT0362 at 438.240 kb on - strand, within BT0362 at 438.273 kb on + strand, within BT0362 at 438.274 kb on - strand, within BT0362 at 438.277 kb on + strand, within BT0362 at 438.308 kb on - strand, within BT0362 at 438.417 kb on + strand, within BT0362 at 438.418 kb on - strand, within BT0362 at 438.418 kb on - strand, within BT0362 at 438.422 kb on - strand, within BT0362 at 438.460 kb on - strand, within BT0362 at 438.460 kb on - strand, within BT0362 at 438.460 kb on - strand, within BT0362 at 438.467 kb on + strand, within BT0362 at 438.467 kb on + strand, within BT0362 at 438.468 kb on - strand, within BT0362 at 438.610 kb on - strand, within BT0362 at 438.696 kb on - strand at 438.958 kb on + strand at 438.999 kb on + strand at 439.065 kb on - strand at 439.115 kb on + strand at 439.155 kb on + strand, within BT0363 at 439.155 kb on + strand, within BT0363 at 439.308 kb on + strand, within BT0363 at 439.351 kb on + strand, within BT0363 at 439.397 kb on - strand, within BT0363 at 439.523 kb on + strand, within BT0363 at 439.549 kb on + strand, within BT0363 at 439.708 kb on + strand, within BT0363 at 439.800 kb on + strand, within BT0363 at 439.868 kb on + strand, within BT0363 at 440.005 kb on + strand, within BT0363 at 440.081 kb on + strand, within BT0363 at 440.082 kb on - strand, within BT0363 at 440.139 kb on + strand, within BT0363 at 440.139 kb on + strand, within BT0363 at 440.143 kb on + strand, within BT0363 at 440.144 kb on - strand, within BT0363 at 440.303 kb on + strand, within BT0363 at 440.366 kb on + strand, within BT0363 at 440.367 kb on - strand, within BT0363 at 440.482 kb on + strand, within BT0363 at 440.604 kb on + strand at 440.605 kb on - strand at 440.661 kb on - strand at 440.716 kb on - strand at 440.737 kb on + strand at 440.737 kb on + strand at 440.783 kb on + strand at 440.923 kb on + strand at 441.121 kb on + strand, within BT0364 at 441.159 kb on + strand, within BT0364 at 441.221 kb on - strand, within BT0364 at 441.315 kb on + strand, within BT0364 at 441.515 kb on + strand, within BT0364 at 441.515 kb on + strand, within BT0364 at 441.674 kb on + strand, within BT0364
Per-strain Table
Position Strand Gene LocusTag Fraction Red Arabinan from sugar-beet; filtered 2.5 mg/ml (C) remove 438,135 + BT0362 0.74 -0.0 438,135 + BT0362 0.74 -0.6 438,142 - BT0362 0.74 -2.3 438,209 - BT0362 0.76 -1.0 438,240 - BT0362 0.77 -0.6 438,273 + BT0362 0.78 -2.0 438,274 - BT0362 0.78 -2.7 438,277 + BT0362 0.79 -1.3 438,308 - BT0362 0.80 -0.4 438,417 + BT0362 0.83 -0.6 438,418 - BT0362 0.83 -1.0 438,418 - BT0362 0.83 -2.7 438,422 - BT0362 0.83 -2.3 438,460 - BT0362 0.84 -1.0 438,460 - BT0362 0.84 -1.6 438,460 - BT0362 0.84 -0.0 438,467 + BT0362 0.85 -0.6 438,467 + BT0362 0.85 -0.0 438,468 - BT0362 0.85 +1.0 438,610 - BT0362 0.89 -0.0 438,696 - -1.6 438,958 + -1.0 438,999 + -0.3 439,065 - -0.0 439,115 + -0.0 439,155 + BT0363 0.11 -1.0 439,155 + BT0363 0.11 -2.6 439,308 + BT0363 0.20 -1.6 439,351 + BT0363 0.22 -1.3 439,397 - BT0363 0.25 -1.0 439,523 + BT0363 0.32 -2.0 439,549 + BT0363 0.33 -0.7 439,708 + BT0363 0.42 -1.2 439,800 + BT0363 0.47 -1.6 439,868 + BT0363 0.51 -3.0 440,005 + BT0363 0.59 -3.7 440,081 + BT0363 0.63 -1.0 440,082 - BT0363 0.63 -1.0 440,139 + BT0363 0.67 -0.0 440,139 + BT0363 0.67 -3.0 440,143 + BT0363 0.67 -1.4 440,144 - BT0363 0.67 -3.0 440,303 + BT0363 0.76 -1.0 440,366 + BT0363 0.79 -0.0 440,367 - BT0363 0.79 -2.4 440,482 + BT0363 0.86 -0.0 440,604 + -0.7 440,605 - -0.6 440,661 - -2.6 440,716 - -1.0 440,737 + -0.0 440,737 + +1.6 440,783 + -0.0 440,923 + -0.0 441,121 + BT0364 0.12 -0.0 441,159 + BT0364 0.13 -1.7 441,221 - BT0364 0.15 -0.0 441,315 + BT0364 0.18 -2.8 441,515 + BT0364 0.25 -1.6 441,515 + BT0364 0.25 -0.0 441,674 + BT0364 0.30 -0.0
Or see this region's nucleotide sequence