Strain Fitness in Bacteroides thetaiotaomicron VPI-5482 around BT2451

Experiment: Red Arabinan from sugar-beet; filtered 2.5 mg/ml (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Red Arabinan from sugar-beet; filtered 2.5 mg/ml (C)
3,067,970	-				-1.8
3,067,970	-				+1.0
3,067,978	+				-1.0
3,067,979	-				-2.0
3,067,979	-				-0.0
3,068,001	-				+1.6
3,068,056	-				-1.3
3,068,056	-				-0.0
3,068,077	+				-1.0
3,068,194	-		BT2450	0.12	-1.6
3,068,236	-		BT2450	0.17	-2.2
3,068,239	-		BT2450	0.17	-4.0
3,068,270	+		BT2450	0.21	-0.0
3,068,271	-		BT2450	0.21	-1.7
3,068,282	+		BT2450	0.22	-0.2
3,068,332	-		BT2450	0.28	+1.0
3,068,351	+		BT2450	0.30	-1.2
3,068,351	+		BT2450	0.30	-1.2
3,068,352	-		BT2450	0.31	-2.8
3,068,352	-		BT2450	0.31	-2.0
3,068,379	-		BT2450	0.34	-1.3
3,068,385	-		BT2450	0.35	-1.6
3,068,401	-		BT2450	0.36	-1.0
3,068,406	+		BT2450	0.37	-0.0
3,068,406	+		BT2450	0.37	-0.0
3,068,452	-		BT2450	0.42	-1.9
3,068,466	-		BT2450	0.44	-1.0
3,068,606	-		BT2450	0.61	-0.4
3,068,622	+		BT2450	0.63	-0.9
3,068,625	-		BT2450	0.63	-0.0
3,068,670	-		BT2450	0.68	-1.0
3,068,670	-		BT2450	0.68	-2.6
3,068,674	+		BT2450	0.69	+0.2
3,068,695	-		BT2450	0.71	-0.0
3,068,758	+				-1.0
3,068,759	-		BT2450	0.79	-3.4
3,068,795	+		BT2450	0.83	-0.0
3,068,796	-		BT2450	0.83	-0.0
3,068,796	-		BT2450	0.83	-2.8
3,068,910	+				-0.0
3,069,110	+		BT2451	0.11	-1.3
3,069,181	+		BT2451	0.17	+1.0
3,069,181	+		BT2451	0.17	+1.2
3,069,201	+		BT2451	0.18	-1.4
3,069,201	+		BT2451	0.18	+1.0
3,069,202	-		BT2451	0.18	-0.8
3,069,209	+		BT2451	0.19	-0.5
3,069,209	+		BT2451	0.19	-0.0
3,069,209	+		BT2451	0.19	-2.6
3,069,209	+		BT2451	0.19	-1.0
3,069,209	+		BT2451	0.19	-1.6
3,069,229	-		BT2451	0.20	-2.5
3,069,280	+		BT2451	0.24	-0.0
3,069,297	-		BT2451	0.26	-1.0
3,069,298	-		BT2451	0.26	-2.2
3,069,306	-		BT2451	0.26	-2.8
3,069,309	-		BT2451	0.27	-2.6
3,069,309	-		BT2451	0.27	-0.6
3,069,341	-		BT2451	0.29	+1.0
3,069,341	-		BT2451	0.29	-2.3
3,069,358	-		BT2451	0.31	-1.6
3,069,417	+		BT2451	0.35	-1.1
3,069,424	+		BT2451	0.36	-1.6
3,069,453	-		BT2451	0.38	-1.0
3,069,460	+		BT2451	0.38	-2.0
3,069,482	+		BT2451	0.40	+1.3
3,069,495	-		BT2451	0.41	-3.3
3,069,495	-		BT2451	0.41	-1.8
3,069,499	-		BT2451	0.42	-3.0
3,069,502	+		BT2451	0.42	+1.0
3,069,503	-		BT2451	0.42	-1.6
3,069,503	-		BT2451	0.42	-0.0
3,069,538	+		BT2451	0.45	-1.0
3,069,582	-		BT2451	0.48	-1.6
3,069,599	+		BT2451	0.49	+1.0
3,069,600	-		BT2451	0.49	-1.2
3,069,600	-		BT2451	0.49	-2.0
3,069,601	+		BT2451	0.49	-1.2
3,069,602	-		BT2451	0.50	-2.3
3,069,643	+		BT2451	0.53	-1.4
3,069,644	-		BT2451	0.53	-3.0
3,069,652	+		BT2451	0.53	-0.4
3,069,653	-		BT2451	0.54	-0.0
3,069,697	-		BT2451	0.57	-1.2
3,069,697	-		BT2451	0.57	-1.6
3,069,698	+		BT2451	0.57	-1.6
3,069,699	-		BT2451	0.57	-2.3
3,069,699	-		BT2451	0.57	-1.8
3,069,699	-		BT2451	0.57	-2.6
3,069,848	+		BT2451	0.69	-2.3
3,069,892	+		BT2451	0.72	-2.0
3,069,892	+		BT2451	0.72	-2.6
3,069,900	-		BT2451	0.73	-0.7
3,069,903	-		BT2451	0.73	-1.0
3,069,925	+		BT2451	0.75	+0.4
3,069,926	-		BT2451	0.75	-2.0
3,069,962	+		BT2451	0.78	-1.3
3,069,962	+		BT2451	0.78	-1.1
3,070,034	+		BT2451	0.83	-2.3
3,070,084	-		BT2451	0.87	-1.6
3,070,094	-		BT2451	0.88	-0.0
3,070,118	+		BT2451	0.90	-1.0
3,070,118	+		BT2451	0.90	-1.0
3,070,125	+				-1.0
3,070,129	-				-1.2
3,070,163	+				-0.0
3,070,196	+				-0.0
3,070,207	-				-2.6
3,070,229	+				-0.7
3,070,229	+				-0.3
3,070,230	-				-0.0
3,070,237	+				-0.7
3,070,245	+				-1.5
3,070,269	-				-2.3
3,070,293	+		BT2452	0.10	-2.6
3,070,342	+		BT2452	0.22	-0.0
3,070,342	+		BT2452	0.22	-2.8
3,070,347	+		BT2452	0.24	-2.0
3,070,348	-		BT2452	0.24	-1.4
3,070,402	-		BT2452	0.38	-2.6
3,070,447	+		BT2452	0.49	-2.0
3,070,459	-		BT2452	0.52	-0.0
3,070,460	+		BT2452	0.52	-1.9
3,070,461	-		BT2452	0.53	-2.5
3,070,462	+		BT2452	0.53	-1.0
3,070,462	+		BT2452	0.53	-1.7
3,070,463	-		BT2452	0.53	-1.1
3,070,463	-		BT2452	0.53	-1.2
3,070,508	+		BT2452	0.64	-1.0
3,070,508	+		BT2452	0.64	-2.0
3,070,582	+		BT2452	0.83	-1.0
3,070,582	+		BT2452	0.83	+0.5
3,070,592	-		BT2452	0.86	-1.6
3,070,592	-		BT2452	0.86	+0.6
3,070,592	-		BT2452	0.86	-1.3
3,070,594	-		BT2452	0.86	+0.4
3,070,611	-				-1.3
3,070,612	+				-1.9
3,070,613	-				-1.6
3,070,613	-				-1.0
3,070,616	-				-0.4
3,070,621	+				-2.1
3,070,622	-				-3.2
3,070,622	-				-2.3
3,070,624	+				-3.2
3,070,624	+				-0.4
3,070,627	-				-0.0
3,070,630	-				-1.0
3,070,698	+		BT2453	0.20	-2.8
3,070,698	+		BT2453	0.20	-0.0
3,070,705	-		BT2453	0.23	-2.0
3,070,736	+		BT2453	0.38	-1.5
3,070,736	+		BT2453	0.38	+0.6
3,070,773	+		BT2453	0.56	-0.6
3,070,776	-		BT2453	0.57	-0.3
3,070,860	-				-0.0
3,070,883	+				-1.2
3,070,884	-				-1.1
3,070,914	+				-1.5
3,070,914	+				-1.0
3,070,914	+				-1.0
3,070,914	+				-1.4
3,070,915	-				-2.6
3,070,915	-				-1.0
3,070,915	-				-2.0
3,070,915	-				-0.6
3,070,915	-				-1.4
3,070,919	-				-0.6
3,070,919	-				-1.6
3,070,925	-				-2.8
3,070,993	+				+1.0
3,070,993	+				-2.0
3,070,993	+				-1.3
3,070,999	-				-1.8
3,071,009	+				-0.0
3,071,010	-				-0.8
3,071,016	+				-1.3
3,071,017	-				-1.0
3,071,024	+				+1.0
3,071,024	+				-2.1
3,071,025	-		BT2454	0.10	-0.0
3,071,072	+		BT2454	0.28	-1.0
3,071,073	-		BT2454	0.29	-0.0
3,071,125	-		BT2454	0.49	-0.8
3,071,138	-		BT2454	0.54	-1.1
3,071,141	+		BT2454	0.55	-1.6
3,071,141	+		BT2454	0.55	+0.2
3,071,156	+		BT2454	0.61	-1.0
3,071,193	+		BT2454	0.75	-0.4
3,071,194	-		BT2454	0.76	+2.3
3,071,194	-		BT2454	0.76	-0.9
3,071,228	-		BT2454	0.89	-0.8
3,071,229	+		BT2454	0.89	-1.6
3,071,230	-		BT2454	0.90	-1.2
3,071,230	-		BT2454	0.90	-1.0
3,071,244	-				-1.7