Strain Fitness in Bacteroides thetaiotaomicron VPI-5482 around BT1763

Experiment: Red Arabinan from sugar-beet; filtered 2.5 mg/ml (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Red Arabinan from sugar-beet; filtered 2.5 mg/ml (C)
2,178,861	+		BT1762	0.52	-0.6
2,178,861	+		BT1762	0.52	-1.9
2,178,991	-		BT1762	0.60	-1.1
2,178,993	-		BT1762	0.60	-1.0
2,178,999	-		BT1762	0.61	+1.0
2,179,014	-		BT1762	0.61	-1.0
2,179,100	-		BT1762	0.66	-2.6
2,179,127	+		BT1762	0.68	-1.0
2,179,151	+		BT1762	0.69	-1.2
2,179,152	-		BT1762	0.69	+1.0
2,179,353	+		BT1762	0.81	+1.0
2,179,353	+		BT1762	0.81	-2.3
2,179,353	+		BT1762	0.81	-1.0
2,179,377	+		BT1762	0.83	-2.6
2,179,383	+		BT1762	0.83	+0.3
2,179,384	-		BT1762	0.83	-2.5
2,179,445	+		BT1762	0.87	-1.0
2,179,463	-		BT1762	0.88	+0.0
2,179,497	+		BT1762	0.90	-2.6
2,179,638	+				+0.0
2,179,655	-				-1.6
2,179,656	+				-2.2
2,179,658	+				-1.6
2,179,661	-				-1.0
2,179,664	-				-0.6
2,179,664	-				+0.0
2,179,716	+				+0.0
2,179,931	+				-1.6
2,179,935	+				-1.0
2,180,001	+				+0.0
2,180,096	-		BT1763	0.13	+1.6
2,180,096	-		BT1763	0.13	-2.5
2,180,096	-		BT1763	0.13	-2.4
2,180,144	+				+0.0
2,180,187	+		BT1763	0.16	+0.0
2,180,579	-		BT1763	0.28	+0.0
2,180,640	-		BT1763	0.30	-0.7
2,180,749	+		BT1763	0.33	-1.6
2,180,792	+		BT1763	0.35	-2.5
2,180,820	+		BT1763	0.36	-0.6
2,180,826	-		BT1763	0.36	-0.6
2,180,830	-		BT1763	0.36	+1.0
2,180,837	+		BT1763	0.36	-1.0
2,180,837	+		BT1763	0.36	-1.6
2,180,838	-		BT1763	0.36	-1.0
2,181,047	+		BT1763	0.43	-1.0
2,181,052	-		BT1763	0.43	-1.0
2,181,117	-		BT1763	0.45	-0.6
2,181,273	-		BT1763	0.50	-1.1
2,181,343	-		BT1763	0.52	-0.6
2,181,380	+		BT1763	0.54	-1.0
2,181,458	+		BT1763	0.56	-3.0
2,181,506	+		BT1763	0.58	-1.0
2,181,583	+		BT1763	0.60	+0.3
2,181,584	-		BT1763	0.60	-2.0
2,181,717	+		BT1763	0.64	-1.0
2,181,771	-		BT1763	0.66	-0.8
2,181,831	-		BT1763	0.68	-1.0
2,181,840	+		BT1763	0.68	-1.6
2,181,895	-		BT1763	0.70	-1.0
2,181,957	+		BT1763	0.72	-2.6
2,181,957	+		BT1763	0.72	+0.0
2,181,958	-		BT1763	0.72	+1.0
2,181,959	+		BT1763	0.72	+0.0
2,181,971	+		BT1763	0.73	-1.8
2,181,991	-		BT1763	0.73	+0.0
2,182,033	-		BT1763	0.75	-1.3
2,182,147	-		BT1763	0.78	-2.8
2,182,182	-		BT1763	0.79	+1.0
2,182,185	+		BT1763	0.79	-1.0
2,182,186	-		BT1763	0.79	+0.0
2,182,279	+		BT1763	0.82	-2.5
2,182,327	+		BT1763	0.84	+0.6
2,182,327	+		BT1763	0.84	-1.6
2,182,482	+		BT1763	0.89	-2.0
2,182,482	+		BT1763	0.89	-2.0
2,182,485	+		BT1763	0.89	-2.0
2,182,538	-				+0.0
2,182,584	+				+1.0
2,182,587	-				+0.0
2,182,741	-				+0.4
2,182,828	+				-2.3
2,182,834	-				-0.8
2,182,853	+				-0.6
2,182,935	+				-0.6
2,182,945	-				+0.0
2,182,957	+				-1.6
2,182,957	+				-1.0
2,182,967	+				+0.0
2,182,970	-				-0.9
2,183,029	-				-1.6
2,183,070	-				+0.0
2,183,072	+				-1.6
2,183,080	+				-0.3
2,183,091	+				+1.0
2,183,276	-		BT1764	0.17	-1.6
2,183,322	-		BT1764	0.22	-2.1
2,183,322	-		BT1764	0.22	+1.0
2,183,389	+		BT1764	0.30	-0.5
2,183,390	-		BT1764	0.30	+0.0
2,183,455	+		BT1764	0.38	-1.7
2,183,456	-		BT1764	0.38	-1.0
2,183,466	-		BT1764	0.39	+1.0
2,183,489	+		BT1764	0.41	+1.0
2,183,492	-		BT1764	0.42	-1.1
2,183,556	+		BT1764	0.49	+0.2
2,183,580	-		BT1764	0.52	+1.0
2,183,628	+		BT1764	0.57	-1.6
2,183,775	+		BT1764	0.74	-1.7
2,183,778	-		BT1764	0.75	-1.3
2,183,796	+		BT1764	0.77	+0.4
2,183,800	+		BT1764	0.77	-1.2
2,183,800	+		BT1764	0.77	+1.0