Experiment: Red Arabinan from sugar-beet; filtered 5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BT0437 and BT0438 are separated by 48 nucleotides BT0438 and BT0439 are separated by 134 nucleotides
BT0437: BT0437 - N-acylglucosamine 2-epimerase (NCBI ptt file), at 526,439 to 527,629
BT0437
BT0438: BT0438 - alpha-N-acetylglucosaminidase precursor (NCBI ptt file), at 527,678 to 529,870
BT0438
BT0439: BT0439 - putative outer membrane protein, probably involved in nutrient binding (NCBI ptt file), at 530,005 to 533,124
BT0439
Position (kb) 527
528
529
530 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 526.775 kb on - strand, within BT0437 at 526.912 kb on + strand, within BT0437 at 526.913 kb on - strand, within BT0437 at 527.081 kb on - strand, within BT0437 at 527.512 kb on - strand at 527.557 kb on - strand at 527.599 kb on - strand at 527.618 kb on - strand at 527.650 kb on - strand at 527.653 kb on - strand at 527.696 kb on + strand at 527.696 kb on + strand at 527.696 kb on + strand at 527.704 kb on - strand at 527.927 kb on + strand, within BT0438 at 527.964 kb on - strand, within BT0438 at 527.997 kb on + strand, within BT0438 at 528.077 kb on - strand, within BT0438 at 528.132 kb on + strand, within BT0438 at 528.142 kb on + strand, within BT0438 at 528.178 kb on - strand, within BT0438 at 528.381 kb on + strand, within BT0438 at 528.403 kb on - strand, within BT0438 at 528.467 kb on + strand, within BT0438 at 528.560 kb on + strand, within BT0438 at 528.561 kb on - strand, within BT0438 at 528.596 kb on - strand, within BT0438 at 528.689 kb on - strand, within BT0438 at 528.822 kb on + strand, within BT0438 at 528.843 kb on - strand, within BT0438 at 528.857 kb on + strand, within BT0438 at 528.859 kb on + strand, within BT0438 at 528.859 kb on + strand, within BT0438 at 528.870 kb on - strand, within BT0438 at 529.016 kb on + strand, within BT0438 at 529.228 kb on + strand, within BT0438 at 529.248 kb on - strand, within BT0438 at 529.647 kb on + strand, within BT0438 at 529.659 kb on - strand at 529.659 kb on - strand at 529.696 kb on - strand at 529.699 kb on - strand at 529.753 kb on + strand at 529.754 kb on - strand at 529.798 kb on + strand at 529.799 kb on - strand at 529.851 kb on - strand at 529.853 kb on - strand at 530.082 kb on - strand at 530.100 kb on + strand at 530.199 kb on + strand at 530.356 kb on - strand, within BT0439 at 530.356 kb on - strand, within BT0439 at 530.356 kb on - strand, within BT0439 at 530.365 kb on - strand, within BT0439 at 530.408 kb on + strand, within BT0439 at 530.413 kb on + strand, within BT0439 at 530.490 kb on + strand, within BT0439 at 530.529 kb on - strand, within BT0439 at 530.618 kb on + strand, within BT0439 at 530.646 kb on + strand, within BT0439 at 530.647 kb on - strand, within BT0439 at 530.658 kb on - strand at 530.744 kb on + strand, within BT0439 at 530.748 kb on + strand, within BT0439 at 530.781 kb on + strand, within BT0439 at 530.804 kb on - strand, within BT0439
Per-strain Table
Position Strand Gene LocusTag Fraction Red Arabinan from sugar-beet; filtered 5 mg/ml (C) remove 526,775 - BT0437 0.28 +0.1 526,912 + BT0437 0.40 -1.5 526,913 - BT0437 0.40 -1.9 527,081 - BT0437 0.54 -0.9 527,512 - -0.9 527,557 - +0.8 527,599 - -2.2 527,618 - -0.2 527,650 - +0.5 527,653 - -0.3 527,696 + -0.9 527,696 + +0.1 527,696 + -2.1 527,704 - +0.1 527,927 + BT0438 0.11 -1.5 527,964 - BT0438 0.13 +2.4 527,997 + BT0438 0.15 -1.5 528,077 - BT0438 0.18 +0.1 528,132 + BT0438 0.21 -1.5 528,142 + BT0438 0.21 -0.9 528,178 - BT0438 0.23 -0.9 528,381 + BT0438 0.32 +0.1 528,403 - BT0438 0.33 +1.1 528,467 + BT0438 0.36 -0.9 528,560 + BT0438 0.40 -3.2 528,561 - BT0438 0.40 -1.8 528,596 - BT0438 0.42 -1.2 528,689 - BT0438 0.46 -1.5 528,822 + BT0438 0.52 -1.5 528,843 - BT0438 0.53 -1.9 528,857 + BT0438 0.54 +0.1 528,859 + BT0438 0.54 -0.9 528,859 + BT0438 0.54 -0.9 528,870 - BT0438 0.54 +0.1 529,016 + BT0438 0.61 +0.1 529,228 + BT0438 0.71 -0.9 529,248 - BT0438 0.72 -1.6 529,647 + BT0438 0.90 +1.7 529,659 - -0.9 529,659 - -2.2 529,696 - -0.9 529,699 - -0.9 529,753 + +0.1 529,754 - +1.1 529,798 + -1.2 529,799 - -0.4 529,851 - -1.7 529,853 - -0.7 530,082 - -0.5 530,100 + +1.1 530,199 + -2.5 530,356 - BT0439 0.11 -1.5 530,356 - BT0439 0.11 -1.5 530,356 - BT0439 0.11 -0.5 530,365 - BT0439 0.12 -0.9 530,408 + BT0439 0.13 -0.5 530,413 + BT0439 0.13 +0.1 530,490 + BT0439 0.16 -2.2 530,529 - BT0439 0.17 -1.5 530,618 + BT0439 0.20 +0.1 530,646 + BT0439 0.21 +0.1 530,647 - BT0439 0.21 -2.7 530,658 - +0.1 530,744 + BT0439 0.24 -1.2 530,748 + BT0439 0.24 -0.9 530,781 + BT0439 0.25 +0.1 530,804 - BT0439 0.26 -1.9
Or see this region's nucleotide sequence