Strain Fitness in Bacteroides thetaiotaomicron VPI-5482 around BT2697

Experiment: Amylopectin from Potato; autoclaved 2.5 mg/ml (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Amylopectin from Potato; autoclaved 2.5 mg/ml (C)
3,359,688	-				-2.4
3,359,765	-		BT2696	0.34	-0.6
3,359,830	-		BT2696	0.68	-1.7
3,359,830	-		BT2696	0.68	+0.4
3,359,830	-		BT2696	0.68	-1.7
3,359,841	+		BT2696	0.73	-0.2
3,359,841	+		BT2696	0.73	-0.3
3,359,849	+		BT2696	0.77	+0.1
3,359,849	+		BT2696	0.77	-1.5
3,359,964	+				-1.2
3,359,997	+				-1.0
3,359,998	-				-2.4
3,360,043	+				-1.0
3,360,043	+				+1.1
3,360,044	-				-1.2
3,360,048	+				-0.2
3,360,048	+				+2.1
3,360,049	-				-1.6
3,360,051	+				-1.6
3,360,065	+				-0.9
3,360,069	-				-0.5
3,360,102	-				+1.1
3,360,132	+				-1.9
3,360,133	-				-1.5
3,360,145	+				-0.7
3,360,182	+				-2.5
3,360,183	-				-1.1
3,360,199	-				+1.7
3,360,199	-				-1.9
3,360,203	+				-0.9
3,360,203	+				-0.9
3,360,204	-				-2.2
3,360,246	+				-1.8
3,360,247	-				-1.9
3,360,249	+				+0.1
3,360,269	+				+0.1
3,360,270	-				-0.7
3,360,270	-				-1.9
3,360,272	+				-0.8
3,360,272	+				+0.1
3,360,273	-				-1.3
3,360,273	-				-1.5
3,360,273	-				-0.9
3,360,275	-				-0.6
3,360,303	-				-1.4
3,360,321	+				-2.7
3,360,406	-				-1.3
3,360,424	+				+0.1
3,360,428	-				-1.5
3,360,438	+				-1.1
3,360,453	-				-0.9
3,360,510	-				-0.9
3,360,530	+				-0.5
3,360,531	-				-0.9
3,360,534	+				+0.1
3,360,534	+				-0.9
3,360,534	+				-0.3
3,360,535	-				-0.6
3,360,535	-				-1.4
3,360,546	-				-0.6
3,360,576	-				-1.5
3,360,589	+				-0.3
3,360,592	+				+0.1
3,360,612	+				+0.2
3,360,649	+				+0.1
3,360,652	+				+0.1
3,360,672	+				-1.4
3,360,674	+				-0.7
3,360,674	+				-0.7
3,360,675	-				-2.6
3,360,703	+				-0.5
3,360,703	+				+0.1
3,360,745	+				-1.5
3,360,773	+				-0.4
3,360,796	+				-0.3
3,360,797	-				+0.4
3,360,803	-				-1.6
3,360,868	+		BT2697	0.10	-0.3
3,360,985	-		BT2697	0.17	+1.7
3,361,017	+		BT2697	0.19	+0.1
3,361,017	+		BT2697	0.19	-1.1
3,361,018	-		BT2697	0.19	-0.9
3,361,041	-		BT2697	0.20	+0.1
3,361,041	-		BT2697	0.20	+0.1
3,361,057	+		BT2697	0.21	+0.1
3,361,057	+		BT2697	0.21	+0.5
3,361,076	-		BT2697	0.22	-0.9
3,361,083	+		BT2697	0.22	-1.0
3,361,086	-		BT2697	0.22	-0.3
3,361,195	+		BT2697	0.28	-2.5
3,361,240	+		BT2697	0.31	-2.5
3,361,240	+		BT2697	0.31	-1.0
3,361,246	-		BT2697	0.31	+0.3
3,361,247	+		BT2697	0.31	-0.2
3,361,277	+		BT2697	0.33	+0.7
3,361,345	+		BT2697	0.37	-1.5
3,361,346	-		BT2697	0.37	-2.9
3,361,346	-		BT2697	0.37	-1.5
3,361,349	+		BT2697	0.37	-1.6
3,361,352	+		BT2697	0.37	+0.1
3,361,354	+		BT2697	0.37	-0.9
3,361,355	-		BT2697	0.37	-1.5
3,361,355	-		BT2697	0.37	-0.2
3,361,418	-		BT2697	0.41	+1.7
3,361,482	+		BT2697	0.44	-0.5
3,361,509	-		BT2697	0.46	-1.1
3,361,513	-		BT2697	0.46	-0.5
3,361,587	-		BT2697	0.50	-0.6
3,361,632	-		BT2697	0.52	-0.7
3,361,697	-		BT2697	0.56	-0.7
3,361,822	-		BT2697	0.63	-1.2
3,361,822	-				-1.5
3,361,837	-		BT2697	0.64	-0.9
3,361,843	-		BT2697	0.64	-3.1
3,361,958	+		BT2697	0.70	+0.1
3,361,995	-		BT2697	0.72	-0.9
3,362,011	+		BT2697	0.73	+0.7
3,362,012	-		BT2697	0.73	+0.1
3,362,022	+		BT2697	0.74	-0.4
3,362,022	+		BT2697	0.74	-0.9
3,362,022	+		BT2697	0.74	-0.6
3,362,071	+		BT2697	0.77	-1.5
3,362,133	+		BT2697	0.80	-0.9
3,362,134	-		BT2697	0.80	-0.7
3,362,134	-		BT2697	0.80	-1.1
3,362,198	-		BT2697	0.84	-0.9
3,362,198	-		BT2697	0.84	+1.7
3,362,200	-		BT2697	0.84	-1.6
3,362,231	+		BT2697	0.85	-1.7
3,362,232	-		BT2697	0.85	+2.1
3,362,232	-		BT2697	0.85	-1.9
3,362,238	-		BT2697	0.86	-0.6
3,362,300	+		BT2697	0.89	-1.2
3,362,300	+		BT2697	0.89	-1.5
3,362,321	-				+0.7
3,362,321	-				-1.2
3,362,336	-				-1.9
3,362,338	+				-0.3
3,362,532	+				-0.9
3,362,532	+				+1.1
3,362,536	+				-1.2
3,362,537	-				+0.1
3,362,541	+				-1.2
3,362,542	-				-0.5
3,362,587	-				-1.1
3,362,617	-				+0.1
3,362,665	+				-1.2
3,362,665	+				-1.0
3,362,679	-				-1.0
3,362,679	-				+0.1
3,362,688	-				-0.9
3,362,742	+		BT2698	0.10	-1.5
3,362,747	+		BT2698	0.11	-0.9
3,362,771	+		BT2698	0.16	-2.5
3,362,771	+		BT2698	0.16	+0.1
3,362,775	+		BT2698	0.16	-0.9
3,362,775	+		BT2698	0.16	-0.8
3,362,775	+		BT2698	0.16	-1.0
3,362,776	-		BT2698	0.17	+0.1
3,362,776	-		BT2698	0.17	-1.5
3,362,776	-		BT2698	0.17	-2.6
3,362,777	+		BT2698	0.17	+0.1
3,362,777	+		BT2698	0.17	+0.4
3,362,778	-		BT2698	0.17	-3.1
3,362,778	-		BT2698	0.17	-3.1
3,362,783	-		BT2698	0.18	-0.3
3,362,801	-		BT2698	0.21	-1.9
3,362,801	-		BT2698	0.21	-0.9
3,362,801	-		BT2698	0.21	+0.1
3,362,831	-		BT2698	0.27	-0.9
3,362,841	+		BT2698	0.29	-1.1
3,362,842	-		BT2698	0.29	-1.7
3,362,842	-		BT2698	0.29	-0.9
3,362,842	-		BT2698	0.29	-0.3
3,362,845	+		BT2698	0.29	-1.1
3,362,846	-		BT2698	0.30	-1.2
3,362,846	-		BT2698	0.30	-1.1
3,362,846	-		BT2698	0.30	-1.3
3,362,846	-		BT2698	0.30	-3.8
3,362,846	-		BT2698	0.30	-1.0
3,362,869	+		BT2698	0.34	-0.4
3,362,926	-		BT2698	0.44	-0.5
3,362,926	-		BT2698	0.44	-0.4
3,362,947	-		BT2698	0.48	+0.1
3,362,949	+		BT2698	0.49	-0.9
3,362,977	+		BT2698	0.54	-0.9
3,362,978	-		BT2698	0.54	-1.3
3,362,981	+		BT2698	0.55	-1.3
3,362,982	-		BT2698	0.55	+1.3
3,363,017	-		BT2698	0.61	-1.1
3,363,018	+		BT2698	0.61	-0.9
3,363,019	-		BT2698	0.62	-1.5
3,363,060	+		BT2698	0.69	-1.1
3,363,069	+		BT2698	0.71	-1.2
3,363,097	-		BT2698	0.76	-2.1
3,363,097	-		BT2698	0.76	-1.0
3,363,110	-		BT2698	0.79	-2.0
3,363,115	-		BT2698	0.79	-0.8
3,363,115	-		BT2698	0.79	-0.8
3,363,131	-		BT2698	0.82	-1.5
3,363,156	+		BT2698	0.87	-1.1
3,363,156	+		BT2698	0.87	+0.1
3,363,162	+		BT2698	0.88	-1.1
3,363,163	-		BT2698	0.88	-2.9
3,363,163	-		BT2698	0.88	-1.5
3,363,197	-				+1.4
3,363,197	-				-0.9
3,363,197	-				-1.2
3,363,197	-				-1.5
3,363,199	-				-2.3
3,363,201	+				-0.2
3,363,210	+				-0.9
3,363,211	-				-0.3
3,363,243	+				-1.2
3,363,266	+				-2.4
3,363,285	+				-0.9
3,363,287	+				-0.5
3,363,287	+				-1.0
3,363,287	+				-1.1
3,363,287	+				-1.5
3,363,315	+				-2.7
3,363,321	+				+0.1
3,363,325	+				-1.1
3,363,334	-				-0.4
3,363,363	+				+1.4
3,363,363	+				-1.3
3,363,364	-				-0.7
3,363,364	-				-0.1
3,363,366	+				-0.9
3,363,387	+		BT2699	0.14	+0.4
3,363,388	-		BT2699	0.14	-2.5
3,363,390	+		BT2699	0.15	-1.5
3,363,400	+		BT2699	0.17	-1.5
3,363,400	+		BT2699	0.17	-0.9
3,363,401	-		BT2699	0.17	-0.9
3,363,404	-		BT2699	0.18	-0.5
3,363,408	+		BT2699	0.19	-2.7
3,363,408	+		BT2699	0.19	-1.5
3,363,409	-		BT2699	0.19	-1.3