Strain Fitness in Bacteroides thetaiotaomicron VPI-5482 around BT1838

Experiment: Amylopectin from Potato; autoclaved 2.5 mg/ml (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Amylopectin from Potato; autoclaved 2.5 mg/ml (C)
2,305,503	-		BT1837	0.34	-0.5
2,305,652	+		BT1837	0.46	-1.7
2,305,652	+		BT1837	0.46	+0.0
2,305,653	-		BT1837	0.46	-1.0
2,305,709	+		BT1837	0.51	-0.2
2,305,733	+		BT1837	0.53	-1.6
2,305,810	+		BT1837	0.59	+0.0
2,305,884	+		BT1837	0.65	+1.0
2,305,943	+		BT1837	0.70	-1.3
2,306,012	-		BT1837	0.76	-2.4
2,306,066	-		BT1837	0.80	+0.0
2,306,114	-		BT1837	0.84	-2.0
2,306,114	-		BT1837	0.84	-0.8
2,306,151	-		BT1837	0.87	+0.0
2,306,257	-				+0.0
2,306,373	-				-1.6
2,306,376	+				-0.6
2,306,386	-				-1.2
2,306,391	+				+0.0
2,306,445	+				-1.0
2,306,449	-				-1.0
2,306,449	-				+0.0
2,306,535	+				+0.8
2,306,585	+				-1.0
2,306,674	+		BT1838	0.10	+0.0
2,306,993	+		BT1838	0.23	-2.8
2,307,000	+		BT1838	0.23	+1.6
2,307,008	-		BT1838	0.24	-2.0
2,307,052	+		BT1838	0.25	-3.0
2,307,052	+		BT1838	0.25	-2.3
2,307,103	+		BT1838	0.27	+1.0
2,307,122	+		BT1838	0.28	+2.0
2,307,138	-		BT1838	0.29	-0.9
2,307,187	-		BT1838	0.31	-1.0
2,307,191	+		BT1838	0.31	-1.6
2,307,191	+		BT1838	0.31	-1.2
2,307,192	-		BT1838	0.31	-0.6
2,307,196	+		BT1838	0.31	-1.6
2,307,196	+		BT1838	0.31	-1.0
2,307,196	+		BT1838	0.31	-1.2
2,307,325	+		BT1838	0.36	-1.0
2,307,378	-		BT1838	0.38	-1.2
2,307,431	-		BT1838	0.40	-1.8
2,307,496	-		BT1838	0.43	+0.4
2,307,515	-		BT1838	0.44	-0.6
2,307,515	-		BT1838	0.44	-1.1
2,307,521	+		BT1838	0.44	+0.0
2,307,521	+		BT1838	0.44	-0.4
2,307,522	-		BT1838	0.44	+0.0
2,307,528	+		BT1838	0.44	-2.3
2,307,732	+		BT1838	0.52	-2.0
2,307,732	+				+0.0
2,307,762	+		BT1838	0.53	-1.6
2,307,763	-		BT1838	0.54	-0.8
2,307,788	+		BT1838	0.54	+0.0
2,307,860	-		BT1838	0.57	-1.3
2,307,896	-		BT1838	0.59	-0.3
2,307,896	-		BT1838	0.59	+1.3
2,307,952	-		BT1838	0.61	+0.0
2,308,015	+		BT1838	0.63	-1.2
2,308,016	-		BT1838	0.64	-0.4
2,308,033	+		BT1838	0.64	-1.6
2,308,034	-		BT1838	0.64	-0.5
2,308,034	-		BT1838	0.64	+0.0
2,308,039	+		BT1838	0.64	+1.6
2,308,040	-		BT1838	0.64	+1.0
2,308,217	+		BT1838	0.72	+1.0
2,308,217	+		BT1838	0.72	+0.0
2,308,218	-		BT1838	0.72	-1.4
2,308,220	-		BT1838	0.72	-2.3
2,308,220	-		BT1838	0.72	+0.3
2,308,222	+		BT1838	0.72	-1.0
2,308,222	+		BT1838	0.72	+1.0
2,308,223	-		BT1838	0.72	+0.3
2,308,223	-		BT1838	0.72	-2.3
2,308,226	-		BT1838	0.72	+2.3
2,308,281	-		BT1838	0.74	+1.0
2,308,297	+		BT1838	0.75	+0.0
2,308,383	+		BT1838	0.78	-1.6
2,308,384	-		BT1838	0.78	+0.0
2,308,580	-		BT1838	0.86	-2.3
2,308,588	+		BT1838	0.86	-1.2
2,308,595	-		BT1838	0.86	+1.0
2,308,682	+		BT1838	0.90	+0.0
2,308,703	+				+1.0
2,308,703	+				-0.4
2,308,716	-				-1.3
2,308,716	-				+0.0
2,308,727	+				+0.0
2,308,727	+				-1.0
2,308,743	+				-4.7
2,308,743	+				-1.3
2,308,744	-				+0.8
2,308,744	-				+0.0
2,308,799	+				-0.6
2,308,829	-				+0.6
2,308,948	-				+0.0
2,308,964	-				-2.3
2,308,964	-				-0.5
2,309,096	-				+0.2
2,309,114	+				+0.8
2,309,193	+		BT1839	0.12	-1.0
2,309,311	+		BT1839	0.20	+1.0
2,309,341	-		BT1839	0.22	-1.0
2,309,341	-		BT1839	0.22	-2.0
2,309,382	+		BT1839	0.25	-1.0
2,309,383	-		BT1839	0.25	-1.6
2,309,438	+		BT1839	0.29	-1.2
2,309,438	+		BT1839	0.29	-1.0
2,309,443	-		BT1839	0.30	+1.0
2,309,443	-		BT1839	0.30	-0.8
2,309,459	-		BT1839	0.31	+0.0
2,309,459	-		BT1839	0.31	-1.6
2,309,467	-		BT1839	0.31	-3.0
2,309,507	-		BT1839	0.34	-2.0
2,309,532	-		BT1839	0.36	-0.5
2,309,532	-		BT1839	0.36	-2.8
2,309,606	-		BT1839	0.41	-0.8
2,309,630	-		BT1839	0.43	-0.8
2,309,662	+		BT1839	0.45	+1.3
2,309,688	-		BT1839	0.47	-1.6
2,309,727	+		BT1839	0.49	+0.0
2,309,791	-		BT1839	0.54	-1.0
2,309,880	+		BT1839	0.60	-1.9
2,309,910	-		BT1839	0.62	-1.6
2,309,916	+		BT1839	0.63	+1.0