Experiment: Amylopectin from Potato; autoclaved 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BT0182 and BT0183 are separated by 94 nucleotides BT0183 and BT0184 are separated by 17 nucleotides BT0184 and BT0185 are separated by 101 nucleotides
BT0182: BT0182 - osmo-regulated proline transporter (Na+/proline symporter) (NCBI ptt file), at 191,106 to 192,656
BT0182
BT0183: BT0183 - transglycosylase (NCBI ptt file), at 192,751 to 194,139
BT0183
BT0184: BT0184 - uridine kinase (uridine monophosphokinase) (NCBI ptt file), at 194,157 to 194,774
BT0184
BT0185: BT0185 - conserved hypothetical protein (NCBI ptt file), at 194,876 to 195,175
BT0185
Position (kb) 192
193
194
195 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 191.762 kb on + strand, within BT0182 at 191.762 kb on + strand, within BT0182 at 191.762 kb on + strand, within BT0182 at 191.763 kb on - strand, within BT0182 at 191.763 kb on - strand, within BT0182 at 191.765 kb on - strand, within BT0182 at 191.858 kb on + strand, within BT0182 at 191.929 kb on + strand, within BT0182 at 191.959 kb on + strand, within BT0182 at 192.003 kb on + strand, within BT0182 at 192.020 kb on - strand, within BT0182 at 192.078 kb on - strand, within BT0182 at 192.096 kb on + strand, within BT0182 at 192.097 kb on - strand, within BT0182 at 192.150 kb on - strand, within BT0182 at 192.164 kb on + strand, within BT0182 at 192.165 kb on - strand, within BT0182 at 192.171 kb on - strand, within BT0182 at 192.177 kb on - strand, within BT0182 at 192.177 kb on - strand, within BT0182 at 192.222 kb on + strand, within BT0182 at 192.231 kb on + strand, within BT0182 at 192.231 kb on + strand, within BT0182 at 192.281 kb on - strand, within BT0182 at 192.353 kb on + strand, within BT0182 at 192.365 kb on + strand, within BT0182 at 192.409 kb on - strand, within BT0182 at 192.485 kb on - strand, within BT0182 at 192.598 kb on + strand at 192.608 kb on + strand at 192.608 kb on + strand at 192.609 kb on - strand at 192.609 kb on - strand at 192.618 kb on - strand at 192.675 kb on + strand at 192.689 kb on + strand at 192.689 kb on + strand at 192.690 kb on - strand at 192.708 kb on - strand at 192.714 kb on - strand at 192.735 kb on - strand at 192.746 kb on - strand at 192.860 kb on + strand at 192.956 kb on + strand, within BT0183 at 192.957 kb on - strand, within BT0183 at 192.961 kb on - strand, within BT0183 at 192.981 kb on - strand, within BT0183 at 193.056 kb on - strand, within BT0183 at 193.099 kb on - strand, within BT0183 at 193.351 kb on - strand, within BT0183 at 193.351 kb on - strand, within BT0183 at 193.545 kb on + strand, within BT0183 at 193.602 kb on + strand, within BT0183 at 193.608 kb on + strand, within BT0183 at 193.609 kb on - strand, within BT0183 at 193.656 kb on - strand, within BT0183 at 193.659 kb on - strand, within BT0183 at 193.676 kb on + strand, within BT0183 at 193.676 kb on + strand, within BT0183 at 193.677 kb on - strand, within BT0183 at 193.678 kb on + strand, within BT0183 at 193.678 kb on + strand, within BT0183 at 193.679 kb on - strand, within BT0183 at 193.680 kb on + strand, within BT0183 at 193.681 kb on - strand, within BT0183 at 193.681 kb on - strand, within BT0183 at 193.681 kb on - strand, within BT0183 at 193.719 kb on + strand, within BT0183 at 193.762 kb on + strand, within BT0183 at 193.830 kb on + strand, within BT0183 at 193.831 kb on - strand, within BT0183 at 193.980 kb on + strand, within BT0183 at 193.986 kb on + strand, within BT0183 at 193.986 kb on + strand, within BT0183 at 193.987 kb on - strand, within BT0183 at 193.988 kb on + strand, within BT0183 at 193.989 kb on - strand, within BT0183 at 193.989 kb on - strand, within BT0183 at 194.087 kb on - strand at 194.102 kb on - strand at 194.103 kb on + strand at 194.189 kb on - strand at 194.418 kb on - strand, within BT0184 at 194.451 kb on - strand, within BT0184 at 194.451 kb on - strand, within BT0184 at 194.524 kb on + strand, within BT0184 at 194.648 kb on + strand at 194.680 kb on - strand, within BT0184 at 194.683 kb on - strand, within BT0184 at 194.686 kb on - strand, within BT0184 at 194.766 kb on + strand at 194.820 kb on + strand at 194.845 kb on + strand at 194.874 kb on + strand at 194.899 kb on + strand at 195.089 kb on + strand, within BT0185 at 195.130 kb on + strand, within BT0185
Per-strain Table
Position Strand Gene LocusTag Fraction Amylopectin from Potato; autoclaved 2.5 mg/ml (C) remove 191,762 + BT0182 0.42 -0.7 191,762 + BT0182 0.42 -0.1 191,762 + BT0182 0.42 -1.1 191,763 - BT0182 0.42 -1.4 191,763 - BT0182 0.42 -1.1 191,765 - BT0182 0.42 -0.2 191,858 + BT0182 0.48 +0.9 191,929 + BT0182 0.53 -1.9 191,959 + BT0182 0.55 -0.1 192,003 + BT0182 0.58 -0.7 192,020 - BT0182 0.59 +0.0 192,078 - BT0182 0.63 -0.1 192,096 + BT0182 0.64 -0.6 192,097 - BT0182 0.64 -0.1 192,150 - BT0182 0.67 -1.1 192,164 + BT0182 0.68 -2.3 192,165 - BT0182 0.68 -1.4 192,171 - BT0182 0.69 +0.3 192,177 - BT0182 0.69 -0.5 192,177 - BT0182 0.69 -1.1 192,222 + BT0182 0.72 -0.8 192,231 + BT0182 0.73 -0.1 192,231 + BT0182 0.73 +0.3 192,281 - BT0182 0.76 +0.9 192,353 + BT0182 0.80 -0.1 192,365 + BT0182 0.81 -2.1 192,409 - BT0182 0.84 -0.9 192,485 - BT0182 0.89 -2.2 192,598 + -0.5 192,608 + -2.4 192,608 + +1.5 192,609 - -1.1 192,609 - -1.1 192,618 - -0.1 192,675 + -1.7 192,689 + +0.9 192,689 + -1.1 192,690 - -0.1 192,708 - -0.4 192,714 - -1.7 192,735 - -0.1 192,746 - -1.7 192,860 + -1.9 192,956 + BT0183 0.15 -1.2 192,957 - BT0183 0.15 -2.4 192,961 - BT0183 0.15 -0.7 192,981 - BT0183 0.17 -0.1 193,056 - BT0183 0.22 -0.1 193,099 - BT0183 0.25 -1.1 193,351 - BT0183 0.43 -0.5 193,351 - BT0183 0.43 -3.7 193,545 + BT0183 0.57 -0.7 193,602 + BT0183 0.61 -2.4 193,608 + BT0183 0.62 -1.7 193,609 - BT0183 0.62 -0.5 193,656 - BT0183 0.65 -0.1 193,659 - BT0183 0.65 -0.1 193,676 + BT0183 0.67 +1.5 193,676 + BT0183 0.67 -1.1 193,677 - BT0183 0.67 -0.1 193,678 + BT0183 0.67 -1.2 193,678 + BT0183 0.67 -1.1 193,679 - BT0183 0.67 -1.4 193,680 + BT0183 0.67 -1.1 193,681 - BT0183 0.67 -0.1 193,681 - BT0183 0.67 -1.1 193,681 - BT0183 0.67 -2.4 193,719 + BT0183 0.70 -0.8 193,762 + BT0183 0.73 -0.1 193,830 + BT0183 0.78 -1.1 193,831 - BT0183 0.78 -2.7 193,980 + BT0183 0.88 -0.1 193,986 + BT0183 0.89 -1.1 193,986 + BT0183 0.89 -0.8 193,987 - BT0183 0.89 -1.3 193,988 + BT0183 0.89 -0.1 193,989 - BT0183 0.89 -1.7 193,989 - BT0183 0.89 -1.1 194,087 - -1.3 194,102 - -0.4 194,103 + -1.7 194,189 - -0.8 194,418 - BT0184 0.42 -1.3 194,451 - BT0184 0.48 -1.1 194,451 - BT0184 0.48 +0.2 194,524 + BT0184 0.59 -0.1 194,648 + -1.0 194,680 - BT0184 0.85 +0.4 194,683 - BT0184 0.85 -0.1 194,686 - BT0184 0.86 -1.7 194,766 + -1.1 194,820 + -2.1 194,845 + -0.1 194,874 + -0.7 194,899 + -2.1 195,089 + BT0185 0.71 -0.1 195,130 + BT0185 0.85 -0.1
Or see this region's nucleotide sequence