Experiment: Amylopectin from Potato; autoclaved 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BT0040 and BT0041 overlap by 4 nucleotides BT0041 and BT0042 overlap by 4 nucleotides
BT0040: BT0040 - hypothetical protein (NCBI ptt file), at 36,478 to 38,019
BT0040
BT0041: BT0041 - F420H2:quinone oxidoreductase (NCBI ptt file), at 38,016 to 39,218
BT0041
BT0042: BT0042 - conserved hypothetical protein (NCBI ptt file), at 39,215 to 40,375
BT0042
Position (kb) 38
39
40 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 37.017 kb on - strand, within BT0040 at 37.050 kb on - strand, within BT0040 at 37.055 kb on - strand, within BT0040 at 37.254 kb on + strand, within BT0040 at 37.304 kb on + strand at 37.304 kb on + strand, within BT0040 at 37.395 kb on + strand, within BT0040 at 37.396 kb on - strand, within BT0040 at 37.396 kb on - strand, within BT0040 at 37.436 kb on - strand, within BT0040 at 37.437 kb on + strand, within BT0040 at 37.438 kb on - strand, within BT0040 at 37.438 kb on - strand, within BT0040 at 37.523 kb on + strand, within BT0040 at 37.563 kb on + strand, within BT0040 at 37.563 kb on + strand, within BT0040 at 37.618 kb on + strand, within BT0040 at 37.666 kb on + strand, within BT0040 at 37.794 kb on + strand, within BT0040 at 37.794 kb on + strand, within BT0040 at 37.796 kb on + strand, within BT0040 at 37.797 kb on - strand, within BT0040 at 37.813 kb on - strand, within BT0040 at 37.854 kb on - strand, within BT0040 at 37.893 kb on + strand at 37.894 kb on - strand at 38.132 kb on - strand at 38.135 kb on + strand at 38.136 kb on - strand at 38.317 kb on + strand, within BT0041 at 38.366 kb on + strand, within BT0041 at 38.366 kb on + strand, within BT0041 at 38.414 kb on - strand, within BT0041 at 38.472 kb on - strand, within BT0041 at 38.528 kb on + strand, within BT0041 at 38.535 kb on + strand, within BT0041 at 38.656 kb on + strand, within BT0041 at 38.688 kb on - strand, within BT0041 at 38.690 kb on - strand, within BT0041 at 38.801 kb on + strand, within BT0041 at 38.804 kb on - strand, within BT0041 at 38.821 kb on - strand, within BT0041 at 38.823 kb on - strand, within BT0041 at 38.823 kb on - strand, within BT0041 at 38.903 kb on + strand, within BT0041 at 38.904 kb on - strand, within BT0041 at 38.982 kb on - strand, within BT0041 at 38.984 kb on - strand, within BT0041 at 38.984 kb on - strand, within BT0041 at 38.984 kb on - strand, within BT0041 at 39.010 kb on + strand, within BT0041 at 39.082 kb on - strand, within BT0041 at 39.215 kb on - strand at 39.223 kb on - strand at 39.255 kb on - strand at 39.255 kb on - strand at 39.264 kb on + strand at 39.264 kb on + strand at 39.319 kb on + strand at 39.335 kb on + strand, within BT0042 at 39.391 kb on + strand, within BT0042 at 39.401 kb on - strand, within BT0042 at 39.408 kb on + strand, within BT0042 at 39.408 kb on + strand, within BT0042 at 39.455 kb on + strand, within BT0042 at 39.456 kb on - strand, within BT0042 at 39.466 kb on + strand, within BT0042 at 39.480 kb on - strand, within BT0042 at 39.544 kb on + strand, within BT0042 at 39.564 kb on - strand, within BT0042 at 39.637 kb on + strand, within BT0042 at 39.695 kb on + strand, within BT0042 at 39.763 kb on - strand, within BT0042 at 39.813 kb on + strand, within BT0042 at 40.165 kb on - strand, within BT0042
Per-strain Table
Position Strand Gene LocusTag Fraction Amylopectin from Potato; autoclaved 2.5 mg/ml (C) remove 37,017 - BT0040 0.35 -1.7 37,050 - BT0040 0.37 -0.7 37,055 - BT0040 0.37 -2.7 37,254 + BT0040 0.50 -0.1 37,304 + -2.4 37,304 + BT0040 0.54 -1.1 37,395 + BT0040 0.59 -0.1 37,396 - BT0040 0.60 -0.5 37,396 - BT0040 0.60 -0.3 37,436 - BT0040 0.62 -1.3 37,437 + BT0040 0.62 -0.1 37,438 - BT0040 0.62 +0.4 37,438 - BT0040 0.62 -1.5 37,523 + BT0040 0.68 -1.1 37,563 + BT0040 0.70 -1.4 37,563 + BT0040 0.70 +1.3 37,618 + BT0040 0.74 -1.7 37,666 + BT0040 0.77 -0.1 37,794 + BT0040 0.85 -0.5 37,794 + BT0040 0.85 -1.7 37,796 + BT0040 0.85 -0.3 37,797 - BT0040 0.86 -1.5 37,813 - BT0040 0.87 +0.9 37,854 - BT0040 0.89 +0.3 37,893 + -1.5 37,894 - -1.7 38,132 - +0.9 38,135 + +0.3 38,136 - -0.1 38,317 + BT0041 0.25 -2.6 38,366 + BT0041 0.29 -1.1 38,366 + BT0041 0.29 +0.9 38,414 - BT0041 0.33 -1.7 38,472 - BT0041 0.38 -1.9 38,528 + BT0041 0.43 -1.1 38,535 + BT0041 0.43 -1.3 38,656 + BT0041 0.53 -2.1 38,688 - BT0041 0.56 -2.3 38,690 - BT0041 0.56 -1.1 38,801 + BT0041 0.65 -2.7 38,804 - BT0041 0.66 -1.1 38,821 - BT0041 0.67 -1.7 38,823 - BT0041 0.67 -1.7 38,823 - BT0041 0.67 -0.1 38,903 + BT0041 0.74 -1.9 38,904 - BT0041 0.74 -1.9 38,982 - BT0041 0.80 -0.1 38,984 - BT0041 0.80 -0.1 38,984 - BT0041 0.80 -0.7 38,984 - BT0041 0.80 -1.7 39,010 + BT0041 0.83 -1.9 39,082 - BT0041 0.89 -0.7 39,215 - -2.1 39,223 - -0.1 39,255 - -2.9 39,255 - -0.3 39,264 + -0.7 39,264 + -0.1 39,319 + -1.1 39,335 + BT0042 0.10 -0.7 39,391 + BT0042 0.15 -2.4 39,401 - BT0042 0.16 +1.5 39,408 + BT0042 0.17 -1.9 39,408 + BT0042 0.17 -1.0 39,455 + BT0042 0.21 -0.1 39,456 - BT0042 0.21 -1.1 39,466 + BT0042 0.22 -0.7 39,480 - BT0042 0.23 +0.3 39,544 + BT0042 0.28 -1.1 39,564 - BT0042 0.30 -1.1 39,637 + BT0042 0.36 -1.1 39,695 + BT0042 0.41 -1.3 39,763 - BT0042 0.47 -0.9 39,813 + BT0042 0.52 -2.9 40,165 - BT0042 0.82 +0.9
Or see this region's nucleotide sequence