Strain Fitness in Bacteroides thetaiotaomicron VPI-5482 around BT2649

Experiment: Red Arabinan from sugar-beet; filtered 5 mg/ml (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Red Arabinan from sugar-beet; filtered 5 mg/ml (C)
3,300,769	+		BT2647	0.75	-1.6
3,300,770	-		BT2647	0.75	-1.4
3,300,770	-		BT2647	0.75	-0.4
3,300,787	+		BT2647	0.77	-0.7
3,300,788	-		BT2647	0.77	-0.9
3,300,910	+		BT2647	0.88	-0.6
3,301,039	+				-0.7
3,301,103	+				-0.6
3,301,213	+		BT2648	0.23	-1.8
3,301,213	+		BT2648	0.23	-1.4
3,301,327	+		BT2648	0.39	+1.0
3,301,331	+		BT2648	0.39	-0.9
3,301,331	+		BT2648	0.39	-0.0
3,301,332	-		BT2648	0.40	-1.4
3,301,332	-		BT2648	0.40	-0.8
3,301,332	-		BT2648	0.40	+0.3
3,301,332	-				-0.0
3,301,332	-		BT2648	0.40	-1.9
3,301,332	-		BT2648	0.40	-1.6
3,301,337	-		BT2648	0.40	-0.9
3,301,420	+		BT2648	0.52	+1.0
3,301,420	+		BT2648	0.52	-3.3
3,301,448	+		BT2648	0.56	-0.6
3,301,448	+		BT2648	0.56	-1.0
3,301,449	-		BT2648	0.56	-0.8
3,301,449	-		BT2648	0.56	-1.0
3,301,492	+		BT2648	0.62	-0.8
3,301,493	-		BT2648	0.63	-3.4
3,301,715	+				+0.7
3,301,745	+				+1.5
3,301,767	+				-1.0
3,301,780	-				-1.3
3,301,795	-				-3.0
3,301,903	+		BT2649	0.19	-2.7
3,301,904	-		BT2649	0.19	-2.0
3,301,904	-		BT2649	0.19	-0.0
3,301,948	+		BT2649	0.25	-0.3
3,301,948	+		BT2649	0.25	-3.5
3,301,949	-		BT2649	0.25	-0.0
3,302,066	-		BT2649	0.39	+1.0
3,302,260	+		BT2649	0.64	-3.6
3,302,260	+		BT2649	0.64	-1.0
3,302,261	-		BT2649	0.64	-1.5
3,302,261	-		BT2649	0.64	-2.0
3,302,282	-		BT2649	0.66	-1.8
3,302,350	-		BT2649	0.75	-1.6
3,302,422	-		BT2649	0.84	-0.6
3,302,434	+		BT2649	0.85	-1.6
3,302,461	+		BT2649	0.89	-2.0
3,302,462	-		BT2649	0.89	-0.9
3,302,505	+				-1.9
3,302,505	+				-2.0
3,302,505	+				-0.8
3,302,505	+				+1.5
3,302,505	+				-0.6
3,302,506	-				-0.0
3,302,506	-				-0.0
3,302,507	+				-1.0
3,302,545	+				-1.6
3,302,548	-				-1.0
3,302,628	+				-0.6
3,302,629	-				-0.5
3,302,721	-		BT2650	0.11	-2.0
3,302,748	-		BT2650	0.14	-1.8
3,302,889	+		BT2650	0.34	-0.0
3,302,890	-		BT2650	0.35	-1.6
3,302,940	+		BT2650	0.42	-1.0
3,302,941	-		BT2650	0.42	-0.0
3,302,950	+		BT2650	0.43	-2.0
3,302,950	+		BT2650	0.43	-0.0
3,302,951	-		BT2650	0.43	-1.6
3,303,012	+		BT2650	0.52	+0.5
3,303,012	+		BT2650	0.52	-1.7
3,303,012	+		BT2650	0.52	-1.0
3,303,030	+		BT2650	0.55	-1.2
3,303,033	-		BT2650	0.55	+1.0
3,303,123	+		BT2650	0.68	-2.3
3,303,224	+		BT2650	0.82	-1.9
3,303,225	-		BT2650	0.82	-1.1
3,303,226	+		BT2650	0.82	-0.8
3,303,227	-		BT2650	0.83	-1.0
3,303,227	-		BT2650	0.83	-0.0
3,303,229	-		BT2650	0.83	+2.0
3,303,229	-		BT2650	0.83	-1.6
3,303,229	-		BT2650	0.83	+1.8
3,303,391	+				-2.5
3,303,394	-				-1.8
3,303,488	+		BT2651	0.28	-1.3