Strain Fitness in Bacteroides thetaiotaomicron VPI-5482 around BT2541

Experiment: Red Arabinan from sugar-beet; filtered 5 mg/ml (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Red Arabinan from sugar-beet; filtered 5 mg/ml (C)
3,172,881	-		BT2540	0.28	-2.1
3,172,915	+		BT2540	0.31	-0.5
3,172,919	-		BT2540	0.31	+1.0
3,172,929	+		BT2540	0.32	-2.0
3,172,955	+		BT2540	0.34	-1.5
3,172,955	+		BT2540	0.34	-1.4
3,172,955	+		BT2540	0.34	-1.3
3,172,956	-		BT2540	0.34	-0.9
3,172,977	-		BT2540	0.36	-0.0
3,173,070	-		BT2540	0.44	-0.6
3,173,222	+		BT2540	0.57	-1.2
3,173,259	+		BT2540	0.60	-0.5
3,173,261	+				-0.8
3,173,262	-		BT2540	0.60	-0.8
3,173,262	-		BT2540	0.60	-0.0
3,173,274	-		BT2540	0.61	-1.4
3,173,285	-		BT2540	0.62	-0.6
3,173,285	-		BT2540	0.62	-1.1
3,173,375	+		BT2540	0.70	-0.0
3,173,380	+		BT2540	0.70	-1.3
3,173,381	-		BT2540	0.71	-1.6
3,173,439	-		BT2540	0.76	-0.6
3,173,473	-		BT2540	0.78	-0.9
3,173,497	-		BT2540	0.80	-1.2
3,173,502	+		BT2540	0.81	-0.0
3,173,615	+				-0.0
3,173,663	-				-1.6
3,173,690	+				-0.5
3,173,691	-				-1.8
3,173,691	-				-1.6
3,173,706	-				-0.0
3,173,706	-				-1.6
3,173,729	+				-2.0
3,173,730	-				-1.2
3,173,771	+				-0.0
3,173,771	+				-2.0
3,173,778	+				-0.6
3,173,806	+				-1.0
3,174,117	+		BT2541	0.11	-2.0
3,174,117	+		BT2541	0.11	-0.6
3,174,187	+		BT2541	0.14	-2.1
3,174,324	+		BT2541	0.19	-2.2
3,174,356	+		BT2541	0.20	-2.2
3,174,588	+		BT2541	0.29	-3.0
3,174,588	+		BT2541	0.29	-2.5
3,174,662	+		BT2541	0.32	-2.5
3,174,693	+		BT2541	0.33	-1.0
3,174,723	+		BT2541	0.34	-2.5
3,174,811	+		BT2541	0.37	-0.0
3,175,018	+		BT2541	0.45	-3.3
3,175,035	+		BT2541	0.45	-3.0
3,175,213	+		BT2541	0.52	-2.2
3,175,242	+		BT2541	0.53	-2.7
3,175,281	+		BT2541	0.55	-2.8
3,175,332	+		BT2541	0.56	-2.9
3,175,555	+		BT2541	0.65	-0.6
3,175,876	+		BT2541	0.77	-2.4
3,175,899	+		BT2541	0.78	-2.2
3,175,923	+		BT2541	0.78	-4.9
3,175,941	+		BT2541	0.79	-1.8
3,175,941	+		BT2541	0.79	-2.0
3,176,014	+		BT2541	0.82	-1.6
3,176,095	+		BT2541	0.85	-0.0
3,176,095	+		BT2541	0.85	-0.6
3,176,122	+		BT2541	0.86	-0.0
3,176,127	+		BT2541	0.86	-1.0
3,176,171	+		BT2541	0.88	-0.0
3,176,197	+		BT2541	0.89	-1.4
3,176,209	+		BT2541	0.89	-0.0
3,176,209	+		BT2541	0.89	-3.2
3,176,209	+		BT2541	0.89	-2.4
3,176,431	+				-1.7
3,176,431	+				-2.2
3,176,488	+				-1.0
3,176,528	+				+1.3
3,176,557	+				-0.0
3,176,585	+		BT2542	0.12	+1.0
3,176,656	+		BT2542	0.23	-3.2
3,176,900	+		BT2542	0.62	-1.4
3,176,900	+		BT2542	0.62	-0.8
3,176,900	+		BT2542	0.62	-1.4
3,176,919	+		BT2542	0.65	-0.0
3,176,934	+		BT2542	0.68	-1.0
3,176,934	+		BT2542	0.68	-0.4
3,176,977	+		BT2542	0.75	-2.0
3,177,053	+		BT2542	0.87	+3.0
3,177,074	+				-2.4
3,177,140	+				-1.9
3,177,144	+				-0.9