Experiment: Red Arabinan from sugar-beet; filtered 5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BT0786 and BT0787 are separated by 102 nucleotides BT0787 and BT0788 are separated by 29 nucleotides BT0788 and BT0789 are separated by 199 nucleotides
BT0786: BT0786 - putative integral membrane protein (NCBI ptt file), at 975,512 to 976,234
BT0786
BT0787: BT0787 - succinyl-CoA synthetase alpha chain (NCBI ptt file), at 976,337 to 977,197
BT0787
BT0788: BT0788 - succinyl-CoA synthetase beta chain (NCBI ptt file), at 977,227 to 978,357
BT0788
BT0789: BT0789 - malonyl CoA-acyl carrier protein transacylase (NCBI ptt file), at 978,557 to 979,444
BT0789
Position (kb) 977
978
979 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 976.232 kb on + strand at 976.252 kb on - strand at 976.274 kb on - strand at 976.277 kb on + strand at 976.277 kb on + strand at 976.278 kb on - strand at 976.354 kb on + strand at 976.354 kb on + strand at 976.355 kb on - strand at 976.400 kb on + strand at 976.409 kb on + strand at 976.445 kb on - strand, within BT0787 at 976.508 kb on + strand, within BT0787 at 976.508 kb on + strand, within BT0787 at 976.516 kb on + strand, within BT0787 at 976.517 kb on - strand, within BT0787 at 976.535 kb on - strand, within BT0787 at 976.679 kb on - strand, within BT0787 at 976.704 kb on - strand, within BT0787 at 976.710 kb on + strand, within BT0787 at 976.711 kb on - strand, within BT0787 at 976.711 kb on - strand, within BT0787 at 976.713 kb on - strand, within BT0787 at 976.715 kb on + strand, within BT0787 at 976.716 kb on - strand, within BT0787 at 976.722 kb on + strand, within BT0787 at 976.798 kb on + strand, within BT0787 at 976.799 kb on - strand, within BT0787 at 976.799 kb on - strand, within BT0787 at 976.957 kb on + strand, within BT0787 at 976.958 kb on - strand, within BT0787 at 977.033 kb on - strand, within BT0787 at 977.107 kb on - strand, within BT0787 at 977.180 kb on - strand at 977.180 kb on - strand at 977.190 kb on - strand at 977.262 kb on + strand at 977.268 kb on + strand at 977.268 kb on + strand at 977.268 kb on + strand at 977.269 kb on - strand at 977.269 kb on - strand at 977.269 kb on - strand at 977.350 kb on + strand, within BT0788 at 977.351 kb on - strand, within BT0788 at 977.353 kb on - strand, within BT0788 at 977.383 kb on - strand, within BT0788 at 977.395 kb on + strand, within BT0788 at 977.461 kb on + strand, within BT0788 at 977.476 kb on - strand, within BT0788 at 977.515 kb on - strand, within BT0788 at 977.571 kb on + strand, within BT0788 at 977.590 kb on + strand, within BT0788 at 977.595 kb on + strand, within BT0788 at 977.604 kb on + strand, within BT0788 at 977.624 kb on + strand, within BT0788 at 977.718 kb on + strand, within BT0788 at 977.718 kb on + strand, within BT0788 at 977.755 kb on + strand, within BT0788 at 977.756 kb on - strand, within BT0788 at 978.054 kb on - strand, within BT0788 at 978.054 kb on - strand, within BT0788 at 978.092 kb on - strand, within BT0788 at 978.139 kb on - strand, within BT0788 at 978.150 kb on - strand, within BT0788 at 978.165 kb on + strand, within BT0788 at 978.254 kb on + strand at 978.254 kb on + strand at 978.286 kb on + strand at 978.350 kb on - strand at 978.386 kb on - strand at 978.386 kb on - strand at 978.457 kb on + strand at 978.457 kb on + strand at 978.523 kb on + strand at 978.524 kb on - strand at 978.542 kb on + strand at 978.559 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Red Arabinan from sugar-beet; filtered 5 mg/ml (C) remove 976,232 + -0.6 976,252 - +0.0 976,274 - -2.0 976,277 + -1.1 976,277 + -0.6 976,278 - +1.6 976,354 + -1.0 976,354 + +1.6 976,355 - +0.6 976,400 + -1.4 976,409 + -0.7 976,445 - BT0787 0.13 -2.0 976,508 + BT0787 0.20 +0.0 976,508 + BT0787 0.20 -0.6 976,516 + BT0787 0.21 -3.6 976,517 - BT0787 0.21 -1.0 976,535 - BT0787 0.23 +0.8 976,679 - BT0787 0.40 +0.6 976,704 - BT0787 0.43 -1.0 976,710 + BT0787 0.43 -1.0 976,711 - BT0787 0.43 -2.3 976,711 - BT0787 0.43 -1.1 976,713 - BT0787 0.44 -1.6 976,715 + BT0787 0.44 +0.6 976,716 - BT0787 0.44 -1.0 976,722 + BT0787 0.45 -1.9 976,798 + BT0787 0.54 +0.0 976,799 - BT0787 0.54 -0.8 976,799 - BT0787 0.54 +1.6 976,957 + BT0787 0.72 +1.0 976,958 - BT0787 0.72 -2.0 977,033 - BT0787 0.81 -1.0 977,107 - BT0787 0.89 -0.8 977,180 - -1.0 977,180 - -1.0 977,190 - -1.5 977,262 + +2.0 977,268 + -1.1 977,268 + -1.6 977,268 + -0.1 977,269 - -1.0 977,269 - -0.6 977,269 - -1.2 977,350 + BT0788 0.11 -2.0 977,351 - BT0788 0.11 -0.3 977,353 - BT0788 0.11 -2.8 977,383 - BT0788 0.14 -1.6 977,395 + BT0788 0.15 +1.0 977,461 + BT0788 0.21 +0.0 977,476 - BT0788 0.22 +0.0 977,515 - BT0788 0.25 +0.0 977,571 + BT0788 0.30 +0.0 977,590 + BT0788 0.32 -1.6 977,595 + BT0788 0.33 -2.3 977,604 + BT0788 0.33 +0.0 977,624 + BT0788 0.35 -3.3 977,718 + BT0788 0.43 -1.5 977,718 + BT0788 0.43 -1.6 977,755 + BT0788 0.47 -3.2 977,756 - BT0788 0.47 -1.6 978,054 - BT0788 0.73 -1.3 978,054 - BT0788 0.73 +0.0 978,092 - BT0788 0.76 -2.3 978,139 - BT0788 0.81 -2.0 978,150 - BT0788 0.82 +1.0 978,165 + BT0788 0.83 -1.6 978,254 + -2.2 978,254 + -0.9 978,286 + +1.0 978,350 - +1.0 978,386 - -1.6 978,386 - +0.0 978,457 + -1.6 978,457 + +0.0 978,523 + +0.0 978,524 - -1.0 978,542 + -2.0 978,559 - +0.5
Or see this region's nucleotide sequence