Strain Fitness in Bacteroides thetaiotaomicron VPI-5482 around BT4084

Experiment: Pullulan; autoclaved 2.5 mg/ml (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBT4083 and BT4084 are separated by 26 nucleotidesBT4084 and BT4085 are separated by 217 nucleotides BT4083: BT4083 - hypothetical protein (NCBI ptt file), at 5,328,036 to 5,329,064 BT4083 BT4084: BT4084 - hypothetical protein (NCBI ptt file), at 5,329,091 to 5,330,422 BT4084 BT4085: BT4085 - putative outer membrane protein, probably involved in nutrient binding (NCBI ptt file), at 5,330,640 to 5,332,496 BT4085 Position (kb) 5329 5330 5331Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 5328.143 kb on + strand, within BT4083at 5328.214 kb on + strand, within BT4083at 5328.215 kb on - strand, within BT4083at 5328.321 kb on + strand, within BT4083at 5328.370 kb on - strand, within BT4083at 5328.391 kb on + strand, within BT4083at 5328.437 kb on + strand, within BT4083at 5328.438 kb on - strand, within BT4083at 5328.513 kb on - strand, within BT4083at 5328.538 kb on + strand, within BT4083at 5328.597 kb on - strand, within BT4083at 5328.627 kb on - strand, within BT4083at 5328.632 kb on + strand, within BT4083at 5328.672 kb on + strand, within BT4083at 5328.673 kb on - strand, within BT4083at 5328.673 kb on - strand, within BT4083at 5328.729 kb on - strand, within BT4083at 5328.743 kb on + strand, within BT4083at 5328.743 kb on + strand, within BT4083at 5328.750 kb on - strand, within BT4083at 5328.758 kb on + strand, within BT4083at 5328.861 kb on - strand, within BT4083at 5328.888 kb on - strand, within BT4083at 5328.897 kb on - strand, within BT4083at 5328.902 kb on - strand, within BT4083at 5328.914 kb on + strand, within BT4083at 5328.922 kb on + strand, within BT4083at 5328.927 kb on - strand, within BT4083at 5328.945 kb on + strand, within BT4083at 5328.945 kb on + strand, within BT4083at 5328.948 kb on + strand, within BT4083at 5328.948 kb on + strand, within BT4083at 5328.994 kb on - strandat 5328.994 kb on - strandat 5329.059 kb on - strandat 5329.084 kb on - strandat 5329.105 kb on + strandat 5329.105 kb on + strandat 5329.105 kb on + strandat 5329.111 kb on + strandat 5329.111 kb on + strandat 5329.206 kb on - strandat 5329.255 kb on - strand, within BT4084at 5329.267 kb on - strand, within BT4084at 5329.267 kb on - strand, within BT4084at 5329.277 kb on - strand, within BT4084at 5329.315 kb on + strand, within BT4084at 5329.315 kb on + strand, within BT4084at 5329.321 kb on - strand, within BT4084at 5329.324 kb on + strand, within BT4084at 5329.393 kb on - strand, within BT4084at 5329.402 kb on + strand, within BT4084at 5329.403 kb on - strand, within BT4084at 5329.403 kb on - strand, within BT4084at 5329.426 kb on - strand, within BT4084at 5329.451 kb on - strand, within BT4084at 5329.457 kb on - strand, within BT4084at 5329.468 kb on + strand, within BT4084at 5329.544 kb on + strand, within BT4084at 5329.544 kb on + strand, within BT4084at 5329.549 kb on - strand, within BT4084at 5329.549 kb on - strand, within BT4084at 5329.555 kb on + strand, within BT4084at 5329.555 kb on + strand, within BT4084at 5329.589 kb on + strand, within BT4084at 5329.591 kb on + strand, within BT4084at 5329.599 kb on + strand, within BT4084at 5329.599 kb on + strand, within BT4084at 5329.599 kb on + strand, within BT4084at 5329.600 kb on - strand, within BT4084at 5329.600 kb on - strand, within BT4084at 5329.616 kb on - strand, within BT4084at 5329.616 kb on - strand, within BT4084at 5329.616 kb on - strand, within BT4084at 5329.654 kb on - strand, within BT4084at 5329.717 kb on - strand, within BT4084at 5329.721 kb on - strand, within BT4084at 5329.721 kb on - strand, within BT4084at 5329.733 kb on - strand, within BT4084at 5329.758 kb on + strand, within BT4084at 5329.796 kb on - strand, within BT4084at 5329.800 kb on - strand, within BT4084at 5329.800 kb on - strand, within BT4084at 5329.835 kb on - strand, within BT4084at 5329.851 kb on - strand, within BT4084at 5329.858 kb on + strand, within BT4084at 5329.862 kb on - strand, within BT4084at 5329.864 kb on - strand, within BT4084at 5329.886 kb on - strand, within BT4084at 5329.886 kb on - strand, within BT4084at 5329.889 kb on + strand, within BT4084at 5329.937 kb on - strand, within BT4084at 5329.967 kb on + strand, within BT4084at 5329.967 kb on + strand, within BT4084at 5329.967 kb on + strand, within BT4084at 5329.968 kb on - strand, within BT4084at 5329.968 kb on - strand, within BT4084at 5329.993 kb on + strand, within BT4084at 5330.042 kb on - strand, within BT4084at 5330.057 kb on + strand, within BT4084at 5330.061 kb on + strand, within BT4084at 5330.061 kb on + strand, within BT4084at 5330.065 kb on + strand, within BT4084at 5330.066 kb on - strand, within BT4084at 5330.066 kb on - strand, within BT4084at 5330.068 kb on + strand, within BT4084at 5330.100 kb on - strand, within BT4084at 5330.100 kb on - strand, within BT4084at 5330.109 kb on + strand, within BT4084at 5330.110 kb on - strand, within BT4084at 5330.126 kb on + strand, within BT4084at 5330.145 kb on + strand, within BT4084at 5330.176 kb on + strand, within BT4084at 5330.197 kb on + strand, within BT4084at 5330.223 kb on + strand, within BT4084at 5330.223 kb on + strand, within BT4084at 5330.223 kb on + strand, within BT4084at 5330.224 kb on - strand, within BT4084at 5330.234 kb on + strand, within BT4084at 5330.237 kb on + strand, within BT4084at 5330.257 kb on - strand, within BT4084at 5330.306 kb on - strandat 5330.308 kb on + strandat 5330.308 kb on + strandat 5330.320 kb on + strandat 5330.404 kb on - strandat 5330.405 kb on + strandat 5330.405 kb on + strandat 5330.405 kb on + strandat 5330.406 kb on - strandat 5330.406 kb on - strandat 5330.423 kb on + strandat 5330.427 kb on + strandat 5330.505 kb on - strandat 5330.526 kb on - strandat 5330.526 kb on - strandat 5330.569 kb on + strandat 5330.571 kb on + strandat 5330.581 kb on - strandat 5330.664 kb on + strandat 5330.664 kb on + strandat 5330.694 kb on - strandat 5330.725 kb on + strandat 5330.729 kb on + strandat 5330.729 kb on + strandat 5330.730 kb on - strandat 5330.823 kb on - strandat 5330.823 kb on - strandat 5330.830 kb on - strand, within BT4085at 5330.907 kb on - strand, within BT4085at 5330.931 kb on - strand, within BT4085at 5330.980 kb on + strand, within BT4085at 5330.981 kb on - strand, within BT4085at 5331.123 kb on + strand, within BT4085at 5331.125 kb on + strand, within BT4085at 5331.160 kb on - strand, within BT4085at 5331.172 kb on + strand, within BT4085at 5331.245 kb on + strand, within BT4085at 5331.246 kb on - strand, within BT4085at 5331.246 kb on - strand, within BT4085at 5331.291 kb on - strand, within BT4085at 5331.359 kb on + strand, within BT4085at 5331.380 kb on - strand, within BT4085

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Per-strain Table

Position Strand Gene LocusTag Fraction Pullulan; autoclaved 2.5 mg/ml (C)
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5,328,143 + BT4083 0.10 -0.9
5,328,214 + BT4083 0.17 -1.2
5,328,215 - BT4083 0.17 -2.9
5,328,321 + BT4083 0.28 -1.6
5,328,370 - BT4083 0.32 -1.5
5,328,391 + BT4083 0.34 +0.7
5,328,437 + BT4083 0.39 -1.8
5,328,438 - BT4083 0.39 -0.0
5,328,513 - BT4083 0.46 -1.0
5,328,538 + BT4083 0.49 -2.6
5,328,597 - BT4083 0.55 -1.0
5,328,627 - BT4083 0.57 -0.0
5,328,632 + BT4083 0.58 -3.0
5,328,672 + BT4083 0.62 -2.4
5,328,673 - BT4083 0.62 -1.6
5,328,673 - BT4083 0.62 -1.0
5,328,729 - BT4083 0.67 -0.0
5,328,743 + BT4083 0.69 -1.0
5,328,743 + BT4083 0.69 -0.0
5,328,750 - BT4083 0.69 -1.6
5,328,758 + BT4083 0.70 -1.0
5,328,861 - BT4083 0.80 -0.0
5,328,888 - BT4083 0.83 -0.0
5,328,897 - BT4083 0.84 -2.6
5,328,902 - BT4083 0.84 -0.0
5,328,914 + BT4083 0.85 -0.0
5,328,922 + BT4083 0.86 -1.6
5,328,927 - BT4083 0.87 -2.1
5,328,945 + BT4083 0.88 -0.0
5,328,945 + BT4083 0.88 -0.0
5,328,948 + BT4083 0.89 -1.6
5,328,948 + BT4083 0.89 -0.0
5,328,994 - -0.0
5,328,994 - -0.0
5,329,059 - -0.0
5,329,084 - -1.6
5,329,105 + -0.5
5,329,105 + +0.3
5,329,105 + +2.0
5,329,111 + -1.5
5,329,111 + -1.0
5,329,206 - -1.6
5,329,255 - BT4084 0.12 -0.0
5,329,267 - BT4084 0.13 +0.6
5,329,267 - BT4084 0.13 -1.6
5,329,277 - BT4084 0.14 -1.0
5,329,315 + BT4084 0.17 -0.0
5,329,315 + BT4084 0.17 -1.6
5,329,321 - BT4084 0.17 -1.0
5,329,324 + BT4084 0.17 -0.3
5,329,393 - BT4084 0.23 -2.2
5,329,402 + BT4084 0.23 -0.3
5,329,403 - BT4084 0.23 +0.4
5,329,403 - BT4084 0.23 -2.2
5,329,426 - BT4084 0.25 -2.0
5,329,451 - BT4084 0.27 -3.0
5,329,457 - BT4084 0.27 -1.3
5,329,468 + BT4084 0.28 -1.9
5,329,544 + BT4084 0.34 -0.6
5,329,544 + BT4084 0.34 -3.2
5,329,549 - BT4084 0.34 -0.0
5,329,549 - BT4084 0.34 -2.6
5,329,555 + BT4084 0.35 -1.4
5,329,555 + BT4084 0.35 -0.9
5,329,589 + BT4084 0.37 -1.1
5,329,591 + BT4084 0.38 -1.1
5,329,599 + BT4084 0.38 -1.0
5,329,599 + BT4084 0.38 -0.6
5,329,599 + BT4084 0.38 +1.0
5,329,600 - BT4084 0.38 +0.6
5,329,600 - BT4084 0.38 -0.0
5,329,616 - BT4084 0.39 -0.8
5,329,616 - BT4084 0.39 -1.6
5,329,616 - BT4084 0.39 -1.0
5,329,654 - BT4084 0.42 +0.4
5,329,717 - BT4084 0.47 -1.1
5,329,721 - BT4084 0.47 -2.0
5,329,721 - BT4084 0.47 -2.4
5,329,733 - BT4084 0.48 -0.6
5,329,758 + BT4084 0.50 +1.0
5,329,796 - BT4084 0.53 -0.0
5,329,800 - BT4084 0.53 -0.7
5,329,800 - BT4084 0.53 -0.8
5,329,835 - BT4084 0.56 +1.0
5,329,851 - BT4084 0.57 -0.8
5,329,858 + BT4084 0.58 -0.0
5,329,862 - BT4084 0.58 -1.0
5,329,864 - BT4084 0.58 -1.0
5,329,886 - BT4084 0.60 -0.6
5,329,886 - BT4084 0.60 -1.6
5,329,889 + BT4084 0.60 +0.6
5,329,937 - BT4084 0.64 -0.6
5,329,967 + BT4084 0.66 -2.4
5,329,967 + BT4084 0.66 -3.1
5,329,967 + BT4084 0.66 -0.0
5,329,968 - BT4084 0.66 -0.8
5,329,968 - BT4084 0.66 -1.0
5,329,993 + BT4084 0.68 -2.6
5,330,042 - BT4084 0.71 -0.8
5,330,057 + BT4084 0.73 -2.4
5,330,061 + BT4084 0.73 -0.0
5,330,061 + BT4084 0.73 -2.6
5,330,065 + BT4084 0.73 -2.0
5,330,066 - BT4084 0.73 -1.3
5,330,066 - BT4084 0.73 -0.0
5,330,068 + BT4084 0.73 -1.0
5,330,100 - BT4084 0.76 -2.0
5,330,100 - BT4084 0.76 -1.4
5,330,109 + BT4084 0.76 -1.6
5,330,110 - BT4084 0.77 -1.7
5,330,126 + BT4084 0.78 +0.7
5,330,145 + BT4084 0.79 -1.4
5,330,176 + BT4084 0.81 -0.9
5,330,197 + BT4084 0.83 -1.6
5,330,223 + BT4084 0.85 -0.0
5,330,223 + BT4084 0.85 -1.9
5,330,223 + BT4084 0.85 -0.9
5,330,224 - BT4084 0.85 -0.6
5,330,234 + BT4084 0.86 -1.0
5,330,237 + BT4084 0.86 +1.0
5,330,257 - BT4084 0.88 -0.8
5,330,306 - -0.0
5,330,308 + -0.6
5,330,308 + -2.0
5,330,320 + -1.7
5,330,404 - -1.3
5,330,405 + -0.0
5,330,405 + -0.0
5,330,405 + -2.6
5,330,406 - -0.0
5,330,406 - -2.0
5,330,423 + -0.9
5,330,427 + -1.0
5,330,505 - +1.0
5,330,526 - +0.1
5,330,526 - -1.3
5,330,569 + -0.0
5,330,571 + -1.6
5,330,581 - -3.2
5,330,664 + -0.0
5,330,664 + -1.4
5,330,694 - +1.2
5,330,725 + -1.7
5,330,729 + +1.0
5,330,729 + -1.0
5,330,730 - -1.2
5,330,823 - -0.7
5,330,823 - -2.8
5,330,830 - BT4085 0.10 -1.6
5,330,907 - BT4085 0.14 +0.6
5,330,931 - BT4085 0.16 -1.3
5,330,980 + BT4085 0.18 -2.0
5,330,981 - BT4085 0.18 -0.9
5,331,123 + BT4085 0.26 -2.0
5,331,125 + BT4085 0.26 -0.0
5,331,160 - BT4085 0.28 -0.0
5,331,172 + BT4085 0.29 -1.0
5,331,245 + BT4085 0.33 -0.6
5,331,246 - BT4085 0.33 -0.0
5,331,246 - BT4085 0.33 -1.3
5,331,291 - BT4085 0.35 -0.0
5,331,359 + BT4085 0.39 -0.0
5,331,380 - BT4085 0.40 -0.0

Or see this region's nucleotide sequence